G2158108



Basic Information


Item Value
gene id G2158108
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 16640735 ~ 16640954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2467317
GTGTGGTCTCACCTGCCGGGGTCAAAGGGGCCCAGCTCGGCCCCTCTCTGCAGTAGAAGTCTGTGTTCGTCTCGTGCTGCTAGATAACCTCTTTCCAGAGAATcctgcccctgcagcagctgggaCAAACCCTGTAGGGACACAACATCACATCATTACTCAAACAACCTGGTGGCCAGTGAGCACTGAGAGACACTCCTCTATACAATATTTGCAAGAC

Function


NR:

description
AT-hook-containing transcription factor-like isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2467317 True 220 lncRNA 0.54 1 16640735 16640954

Neighbor


gene id symbol gene type direction distance location
LOC110509706 LOC106563136 coding downstream 623236 15970492 ~ 16017499 (-)
LOC110509703 LOC106563138 coding downstream 1215427 15105979 ~ 15425308 (-)
LOC110509702 LOC106563139 coding downstream 1563725 15038817 ~ 15087213 (-)
LOC110509700 LOC106563141 coding downstream 1640144 14973955 ~ 15000591 (-)
LOC110509329 NA coding downstream 1693621 14945612 ~ 14947114 (-)
stxbp1a LOC106563129 coding upstream 17432 16658386 ~ 16701533 (-)
slc31a2 copt2 coding upstream 124391 16765345 ~ 16776377 (-)
LOC110509719 fut7 coding upstream 217966 16858920 ~ 16866531 (-)
LOC110509724 LOC106563119 coding upstream 425408 17066362 ~ 17093537 (-)
LOC110509723 LOC106563118 coding upstream 453102 17094056 ~ 17135891 (-)
G2158107 NA non-coding downstream 32 16640078 ~ 16640703 (-)
G2158101 akna non-coding downstream 4941 16635422 ~ 16635794 (-)
G2158097 NA non-coding downstream 10763 16629495 ~ 16629972 (-)
G2158096 NA non-coding downstream 15451 16624623 ~ 16625284 (-)
G2158090 NA non-coding downstream 31694 16608808 ~ 16609041 (-)
G2158109 NA non-coding upstream 107 16641061 ~ 16641886 (-)
G2158149 NA non-coding upstream 62633 16703587 ~ 16704085 (-)
G2158198 LOC106567281 non-coding upstream 155947 16796901 ~ 16799275 (-)
G2158213 NA non-coding upstream 200447 16841401 ~ 16843760 (-)
G2158264 NA non-coding upstream 239954 16880908 ~ 16881194 (-)
G2158088 LOC100136012 other downstream 32729 16607625 ~ 16608006 (-)
G2157743 NA other downstream 217314 16421677 ~ 16423421 (-)
G2157715 NA other downstream 254690 16381190 ~ 16386045 (-)
G2155120 NA other downstream 2409729 14227820 ~ 14231006 (-)
G2155063 LOC106563020 other downstream 2416804 14223121 ~ 14223931 (-)
G2158111 akna other upstream 2727 16643681 ~ 16646597 (-)
LOC110509757 LOC106563370 other upstream 2635314 19275539 ~ 19277044 (-)
G2162005 NA other upstream 3343591 19984545 ~ 19984779 (-)
G2162127 NA other upstream 3442191 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 3447276 20088225 ~ 20093695 (-)

Expression



Co-expression Network