G2158198 (LOC106567281)


Basic Information

Item Value
gene id G2158198
gene name LOC106567281
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 16796901 ~ 16799275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2467412
TTCAGTTATCCCGATCAGTCAACATTTCCAAAATGTCCATAATAAATACCAAAAAAGACAAATCATTTTTAACGTCCATTTCTTCTCTGAGTGAACAGTAATGGTCACAGAAACCATAGATACAGATGGACTTTGCCTTGAAATCAACAAGTACTGTATATAGATGGCTGTGGTGGATTAAGACTTCAAGTGAAGTAAGCAGCAACAATGAGAAGTCTACTACACAAAACATTAACTGTGAAGAAATCATGTACTCTGTCATGACAAAACACTTTCTCTATACAAACCATACCCATGTTTCCACAGGGACATTGGGAATATAACCCACTTTTACAccttaaaatatattaaatataaaaCCCATGCAAAAATGATTAAAACACCTGGCAGATCAATATTGAGACTCAGGAATGATACAATACGCGGATGTGAGTGACGGCATCTGATCATACAAATAGAAACGTTATGGCTGCTGCATCTTAACTCAtcttggtacacacacacacacacacaggtaatctCATAATGCAAAAAGAAAGATGGTGACAGAAAAATAAGTCTGATGTTCTCACTGTCCACACAAAGAACTACACACACAAATAACTACACACaaagattcacacacacacaaagagtcacacacacacaaagaatcaTACAAAGGATGTTTGCAATGAGGACACCGAACAGACAAAACACCAACGGTGTGTTTGATGTGCTGTGAGCTGCTTGGGAAGAAGTCCCTGGATGTATGGTCCCACCATGACGATAGCTCTAGGAGGAAGATGCCGGTGTGCTGAAGTGCATGGCATTATAGGCCGTCTGGTGGCACAGGGGCAGTGGTGAAGATCGGCAGAGTACCAACCTAGAGCTGGCAGACTCAGCATCATGacgttgccacgagcagcactACAAAAATGTAGTTAAGCGCAGTGCAAGACTTTCTCCTCACACAGTATGAGCGCGGCTGCACTTCATGTTACAACGTGGTTTATATGGGACCCAAAATGGCAGAGGAGTTGAGCCTCGCGCTTCAATgctcttagttgttgcggaaatCTGACTGATGTATTGTGTTTACATAACCGACTGACATTTGAAAAATGAAACATGCATGACTAAGGTCGATAAAAGGTATTGATTTGGTAGTGTAGTAACGATTGCACACACACATCTTTTTCACTCTGACATTTCCCTGATGTAGCTACcagtacaaaataaataaaatttaacTAATCGGTTCACCCAAAATGGCACCTTATCCTTTTTCTAAAAGCATTCTTGTGAGTGTTAACACATCCCTTTGGTCAGGAGAGCCCATTCCTCACCTATTCATCTTCAAAATAACACTACTAGCCACACTTTAAATTCACTCACACGCCACTGAATTGACAGGATACCAACTTGTTACAGGGGACAGTAAAGCAATCCCATTTTCAGTGCAGCCGCTCAACACAATCTAGCCTACAGTACAGAGACTCAAACACAAGGCCTCAGACAAAGTGGGTTCCCTATATCAGCCCAATACCCCCTCCCACGCTTACCTCAGCTATTTCTCTGAAATGTGTTGTTATCAATTCTCTCTTACAATCAACTGACTAAATCGGTCATCTCCACAACACAACTGAGTTGGCTTGAGGCTACAGTAGCAAGGTAAGACTAGCTACCTGCCCCATGCCCATCCCTTCCTATACATTAATAAATACTGCAGTTCCAATAACTATCAACTGTACGAGACCACCCTCAGATTTTAAAAGGGGTAGTGAGTGAGTCAATGGGATTGACTGTCACACTGCTAAGGTCCCCTTTTGAGTCAGTCCAGTCCAGAGCGTGCAGCAGGGCCCTCTCTGGCACATCAACGTGCCTCTGGACACCGACCAGGGATCAGTGCTGGGGAGCCCAGGCCCTTGGTCAGTGGGAGGGGGTTGAGGAACCTAACTGAGATCAGGGGTCTGTATCGGGGTCGTTGGCGCTGTGGGAGGGAGGCGAGGCAGCAGTTTGTCTGTAGAAACATGGCATATGATCGTCTCCAGGTGTCAAGCAGCTGTCTCCTTGCTGTTTGTACTCCTCTTCCTCCAACACTACCTCTCCCTTCTCCAGGACAAACTGCAGGGTGGGGCCTCTGGCCTCTCCGTCTTCCAGCTCCCCCTCTTCCGCCAGGCGGAACTTGATGTTCATCTTCCCCAAGGGCTTGTCTGC

Function

NR:

description
ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2467412 True 2199 lncRNA 0.45 3 16796901 16799275

Neighbor

gene id symbol gene type direction distance location
slc31a2 copt2 coding downstream 20524 16765345 ~ 16776377 (-)
stxbp1a LOC106563129 coding downstream 95368 16658386 ~ 16701533 (-)
LOC110509706 LOC106563136 coding downstream 779402 15970492 ~ 16017499 (-)
LOC110509703 LOC106563138 coding downstream 1371593 15105979 ~ 15425308 (-)
LOC110509702 LOC106563139 coding downstream 1719891 15038817 ~ 15087213 (-)
LOC110509719 fut7 coding upstream 59645 16858920 ~ 16866531 (-)
LOC110509724 LOC106563119 coding upstream 267087 17066362 ~ 17093537 (-)
LOC110509723 LOC106563118 coding upstream 294781 17094056 ~ 17135891 (-)
LOC110509725 LOC106563120 coding upstream 336975 17136250 ~ 17139610 (-)
adora2ab LOC106563117 coding upstream 344977 17144252 ~ 17149259 (-)
G2158149 NA non-coding downstream 92816 16703587 ~ 16704085 (-)
G2158109 NA non-coding downstream 155015 16641061 ~ 16641886 (-)
G2158108 NA non-coding downstream 155947 16640735 ~ 16640954 (-)
G2158107 NA non-coding downstream 156198 16640078 ~ 16640703 (-)
G2158101 akna non-coding downstream 161107 16635422 ~ 16635794 (-)
G2158213 NA non-coding upstream 42126 16841401 ~ 16843760 (-)
G2158264 NA non-coding upstream 81633 16880908 ~ 16881194 (-)
G2158274 NA non-coding upstream 94501 16893776 ~ 16894001 (-)
G2158281 LOC106563121 non-coding upstream 101542 16900817 ~ 16912573 (-)
G2158293 NA non-coding upstream 124963 16924238 ~ 16924646 (-)
G2158111 akna other downstream 150304 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 188895 16607625 ~ 16608006 (-)
G2157743 NA other downstream 373480 16421677 ~ 16423421 (-)
G2157715 NA other downstream 410856 16381190 ~ 16386045 (-)
G2155120 NA other downstream 2565895 14227820 ~ 14231006 (-)
LOC110509757 LOC106563370 other upstream 2476993 19275539 ~ 19277044 (-)
G2162005 NA other upstream 3185270 19984545 ~ 19984779 (-)
G2162127 NA other upstream 3283870 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 3288955 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 3509914 20309189 ~ 20309802 (-)

Expression


Co-expression Network