G2158313


Basic Information

Item Value
gene id G2158313
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 16957456 ~ 17042979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2467554
tgaccgaggtcaaacgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcctctagagcagtgatgttttggggctgttgctgggcagcacggactttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggcccttgaaatgcttcttacgaagccactccttcgttgcccgagcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggtaggctttgttactttggtcccagcaaattacaggcctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatatttttttgccccacagtaTACATCACATGAATATAGTCTAGCTCTAGTCATGCAAATTCTCACTCTGTAAGAATATGATGCATTAGTTATGTTTGCTGTTTCTTCTGAACTCTCCTCAATAACTCAGGTTTTAGCCATGAAATCATCTCTGTTTGTTTGATCCCCTGGTGCACCAGATATTGTAATCCTCATTGCCATTGCTTGGGATGAATGTATATATCATTTATCGTCTATCTATTTCAACTGATTCAGCTCCAGAGCCAAAAGTGTAGGGGCGATGTCACaaatacatatgtgtgtgtgcatgtgcgttcATAGgtccgtgtgcgtgcgtgcgttcgtgtgtgtgtggctgcgtgCGTGTGCGTTCTCCCTCTCTGAGATAGCCATGCTGAACCATTCCATTTCACACCACAGAGTGAAGTCACTGACACACACTTCCAGCAGATGAGTTGTGATGTCAGGCCTGGTATCATGGCCAATAGCTCAAGCAAAACCCCTATCAGTGTTACCCGGTGGATCCCTTTCTACTGTCTCCATCGGGGTGATGCCATTTAAATGGCCCATGTCAATGCCTTCCGTCAGTAGCTGTACTCCATCTAGCCTCAAGCCTGTTGGTTGCTCTCACCATCAGCTAGACAGTCCCTGCTCCCCCTCAGGACCCCTTCCTCCACCGGGCCTTGGTCCAGTCAGAAAATAGGCACTTAATAAATTGGTCTGATCTTCATCATTCCAAGCCATTAAGGAGCCATCTGGGGCTCAGCAGAGTTATGTGCTGTAATGTATATGCaccgaggggagagagagtagtgtgtgtgtgtgtgtgtgtgtgcgcccatcAGCATCACACCATAAAACTACTGTATCAAGAACACTGGGGGCAGGCAGTCAGAGGATGGCCAGTGGACATCTAAAAGAGAATAACTCCACACTAGTCAAAGCCaccctgctcacacacacagcattattcCCTGCACAGCTAGCCCTTCTCTGTCGGCGCCAAGTTAACGCAACATAACACGTTCCTCTTCTGTTGTGTGGCTGTTCTGTTGTCCTTTTTCATGTTCTTGAGGGTGAAGAGTTGAGTGGTGGATATCGATGTCATCCCTCGAGCAAAAGATGCCAACGTATGGTCCGCGACGGAGAGCGCTCTCCCTGTTGGAGTCGGAGTCATGTCACCCAGACTCTGACTCAGCAGTCAGCAGAAGTTCTATAGGTagtcttctgttctgttctctgtagTTCATATAAGCCTTCGTTGCTGCGTCTAATTGACGATGCAAACAGCCATACTGTCTCTCACTCCACCCGTAACTTCTCCTTCATGTGACTTCAATTTCTATGACTGTACTGTTACCTTTTCAATATAAAGTGTGAGGGAAATATAAAGTGTGAGGGAAATATAAAGTGTGAGGGAAATATAAAGTGTGAGGGAAATATGAAGTGTGAGGGAAAAAGAAAGTGTGAGGGAAAAATAAAGTGTGAGGGAAAAAGAAAGTGTGAGGGAAATAGAAAGTGTGAGGGAAAAAGAAAGTGTGAGGGAAATAGAAAGTCTTAGGGAAAACATAAGAacggattaaaaataaatataaaaaaaaaattaaaaagaggATTTGTTTTAGCTAATCATTTAAGCTATTTGCTTCTTGCCTCTATCAATGTTACTGTATGTGGCATGGTATAGAGCACAGAGTAAGACTCCACAAACATGTATTTCTCCTCCATCTGTGTTTTGTAGCAGCAACGTGGAAGAGATGGTAGGGGTAAGAAAGTTGAGAATGCCCTAAAATGATTGATGTCTCACTCTTTTTGAAACTTAATGTGCAGCGActcattgtactgtactgtacgctTCAGAGTTATAGGCACTGAGGGAAAACGAAACAAAAATGCTTGTTTTCTTTCACGTCTCATAGGAACTCAGACAGAGGAAGATGCTATTTCTTATGCCTGCCTTGTAGAcatgggctttggtcaaaaggagtgcactatataggaaagaGTGTGACATTTGGGACGAAGCCCAGTAGGTGTGCTCTTCAGCCACGTCTTCCCTCCTCCGTACTCTGCCCACTCAGAGATGGCCGGTGGCTGGCTCAGCTGGAAGATGATTGGCTTAGTTAGAGGAGGATAGCTTGATGACACACTGAGGAGGCATACAGCCCGGCCAACTGGTGGATTATGGCCGCGTTACTGGCTGACCACATTGCAGACACACCCATGTCAGATCTCACAACACCTGGATAGGTGTTTAACAAATCAGCAAACAACATCATATGATACAGCAGCAATCTGATGCCCGACTGTACGGTCGATGGCCtgcacacaaccattggttgatgcaacgTAATGTCTGCAATGTAGTCGGCCTGGAACGTGACAATTATGTTttgaggaggggaaggaaaagcCCATGATTGACATTTAGTTCCATTAAGAAATCCACAGCCTTTTGTATGTCTGTTTTATTATATAGCAAGTAGTCTAAACGGAATTATAATCTATGAGTCATTTAAGATAATGTGACAATTTGTTTATTTTGGAGCATTGACTCTCAATGCATTTTATGAGGTAGATCAATATAGATATCAATGTAGATATCAACAATAAAATACACACTGTATATCTCTACTGGTAATAAATGATTTGAAACGACCAACAT
>TU2467552
gtgggagaacttgcacaattggtggctgactaaatatttttttgccccacagtaTACATCACATGAATATAGTCTAGCTCTAGTCATGCAAATTCTCACTCTGTAAGAATATGATGCATTAGTTATGTTTGCTGTTTCTTCTGAACTCTCCTCAATAACTCAGGTTTTAGCCATGAAATCATCTCTGTTTGTTTGATCCCCTGGTGCACCAGATATTGTAATCCTCATTGCCATTGCTTGGGATGAATGTATATATCATTTATCGTCTATCTATTTCAACTGATTCAGCTCCAGAGCCAAAAGTGTAGGGGCGATGTCACaaatacatatgtgtgtgtgcatgtgcgttcATAGgtccgtgtgcgtgcgtgcgttcgtgtgtgtgtggctgcgtgCGTGTGCGTTCTCCCTCTCTGAGATAGCCATGCTGAACCATTCCATTTCACACCACAGAGTGAAGTCACTGACACACACTTCCAGCAGATGAGTTGTGATGTCAGGCCTGGTATCATGGCCAATAGCTCAAGCAAAACCCCTATCAGTGTTACCCGGTGGATCCCTTTCTACTGTCTCCATCGGGGTGATGCCATTTAAATGGCCCATGTCAATGCCTTCCGTCAGTAGCTGTACTCCATCTAGCCTCAAGCCTGTTGGTTGCTCTCACCATCAGCTAGACAGTCCCTGCTCCCCCTCAGGACCCCTTCCTCCACCGGGCCTTGGTCCAGTCAGAAAATAGGCACTTAATAAATTGGTCTGATCTTCATCATTCCAAGCCATTAAGGAGCCATCTGGGGCTCAGCAGAGTTATGTGCTGTAATGTATATGCaccgaggggagagagagtagtgtgtgtgtgtgtgtgtgtgtgcgcccatcAGCATCACACCATAAAACTACTGTATCAAGAACACTGGGGGCAGGCAGTCAGAGGATGGCCAGTGGACATCTAAAAGAGAATAACTCCACACTAGTCAAAGCCaccctgctcacacacacagcattattcCCTGCACAGCTAGCCCTTCTCTGTCGGCGCCAAGTTAACGCAACATAACACGTTCCTCTTCTGTTGTGTGGCTGTTCTGTTGTCCTTTTTCATGTTCTTGAGGGTGAAGAGTTGAGTGGTGGATATCGATGTCATCCCTCGAGCAAAAGATGCCAACGTATGGTCCGCGACGGAGAGCGCTCTCCCTGTTGGAGTCGGAGTCATGTCACCCAGACTCTGACTCAGCAGTCAGCAGAAGTTCTATAGGTagtcttctgttctgttctctgtagTTCATATAAGCCTTCGTTGCTGCGTCTAATTGACGATGCAAACAGCCATACTGTCTCTCACTCCACCCGTAACTTCTCCTTCATGTGACTTCAATTTCTATGACTGTACTGTTACCTTTTCAATATAAAGTGTGAGGGAAATATAAAGTGTGAGGGAAATATAAAGTGTGAGGGAAATATAAAGTGTGAGGGAAATATGAAGTGTGAGGGAAAAAGAAAGTGTGAGGGAAAAATAAAGTGTGAGGGAAATATAAAGTGTGAGGGAAATATTAAGTGTGAGGGAAATAGAAAGTGTGAGGGAAATAGAAAGTCTTAGGGAAAACATAAGAacggattaaaaataaatataaaaaaaaaattaaaaagaggATTTGTTTTAGCTAATCATTTAAGCTATTTGCTTCTTGCCTCTATCAATGTTACTGTATGTGGCATGGTATAGAGCACAGAGTAAGACTCCACAAACATGTATTTCTCCTCCATCTGTGTTTTGTAGCAGCAACGTGGAAGAGATGGTAGGGGTAAGAAAGTTGAGAATGCCCTAAAATGATTGATGTCTCACTCTTTTTGAAACTTAATGTGCAGCGActcattgtactgtactgtacgctTCAGAGTTATAGGCACTGAGGGAAAACGAAACAAAAATGCTTGTTTTCTTTCACGTCTCATAGGAACTCAGACAGAGGAAGATGCTATTTCTTATGCCTGCCTTGTAGAcatgggctttggtcaaaaggagtgcactatataggaaagaGTGTGACATTTGGGACGAAGCCCAGTAGGTGTGCTCTTCAGCCACGTCTTCCCTCCTCCGTACTCTGCCCACTCAGAGATGGCCGGTGGCTGGCTCAGCTGGAAGATGATTGGCTTAGTTAGAGGAGGATAGCTTGATGACACACTGAGGAGGCATACAGCCCGGCCAACTGGTGGATTATGGCCGCGTTACTGGCTGACCACATTGCAGACACACCCATGTCAGATCTCACAACACCTGGATAGGTGTTTAACAAATCAGCAAACAACATCATATGATACAGCAGCAATCTGATGCCCGACTGTACGGTCGATGGCCtgcacacaaccattggttgatgcaacgTAATGTCTGCAATGTAGTCGGCCTGGAACGTGACAATTATGTTttgaggaggggaaggaaaagcCCATGATTGACATTTAGTTCCATTAAGAAATCCACAGCCTTTTGTATGTCTGTTTTATTATATAGCAAGTAGTCTAAACGGAATTATAATCTATGAGTCATTTAAGATAATGTGACAATTTGTTTATTTTGGAGCATTGACTCTCAATGCATTTTATGAGGTAGATCAATATAGATATCAATGTAGATATCAACAATAAAATACACACTGTATATCTCTACTGGTAATAAATGATTTGAAACGACCAACAT

Function

NR:

description
NMDA receptor synaptonuclear signaling and neuronal migration factor-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2467554 False 3059 lncRNA 0.44 3 16957456 17042979
TU2467552 True 2698 lncRNA 0.44 3 16966580 17042979

Neighbor

gene id symbol gene type direction distance location
LOC110509336 LOC106563121 coding upstream 8381 16900728 ~ 16949075 (+)
clic3 LOC106563124 coding upstream 79425 16812866 ~ 16878031 (+)
pou5f3 LOC106563125 coding upstream 97650 16855976 ~ 16859806 (+)
npdc1a npdc1 coding upstream 114222 16799642 ~ 16843234 (+)
si:ch211-282j22.3 LOC106563127 coding upstream 158063 16776833 ~ 16799393 (+)
LOC110509731 LOC106563154 coding downstream 348116 17391095 ~ 17394366 (+)
LOC110509337 noc4l coding downstream 352871 17395850 ~ 17399424 (+)
LOC110509732 vps29 coding downstream 357264 17400243 ~ 17406305 (+)
LOC110509733 LOC106566318 coding downstream 369582 17412561 ~ 17415939 (+)
arpc3 arpc3 coding downstream 373074 17416053 ~ 17419229 (+)
G2158312 NA non-coding upstream 58 16957039 ~ 16957398 (+)
G2157996 NA non-coding upstream 72082 16885059 ~ 16885374 (+)
G2157891 NA non-coding upstream 255876 16677948 ~ 16701580 (+)
G2157881 NA non-coding upstream 290483 16661230 ~ 16666973 (+)
G2158420 NA non-coding downstream 20524 17063503 ~ 17063912 (+)
G2158427 LOC106563119 non-coding downstream 27708 17070687 ~ 17093509 (+)
G2158464 LOC106563120 non-coding downstream 93266 17136245 ~ 17136879 (+)
G2158467 NA non-coding downstream 153743 17196722 ~ 17197415 (+)
G2158459 NA non-coding downstream 155480 17198459 ~ 17200589 (+)
G2157602 NA other upstream 603791 16350717 ~ 16353665 (+)
G2155696 NA other upstream 1863507 15018627 ~ 15093949 (+)
G2154512 NA other upstream 3021637 13915670 ~ 13935819 (+)
G2154438 NA other upstream 3143486 13806013 ~ 13813970 (+)
G2154391 NA other upstream 3181322 13772708 ~ 13776134 (+)
G2158499 LOC106563144 other downstream 146365 17189344 ~ 17191128 (+)
LOC110509751 LOC106563328 other downstream 2017564 18962089 ~ 19065920 (+)
LOC118945267 NA other downstream 2023199 19066137 ~ 19068784 (+)
LOC110509753 LOC106563373 other downstream 2093690 19136428 ~ 19138160 (+)
LOC110509766 LOC106566689 other downstream 2567910 19609602 ~ 19616511 (+)

Expression


Co-expression Network