G2158464 (LOC106563120)


Basic Information

Item Value
gene id G2158464
gene name LOC106563120
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17136245 ~ 17136879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2467740
GGCAATTCAAATTGACAGAACAATTTATTTAAGAAAAAAGAAAAAGTACAATGTCAAAAAGCAGGTCttgaattttttttaaaaggcTAGCAAAATAATTAGATCAAGTAGagtaccaaattctctaaagatAAAAAGAAACTGTACAATGCAATCGTTTTAAACTAACCAACGCAGATACTACCGCCTTTTCGGGAAAATGGTTCCTCTTCCCATCCCTCCACCACGACCCCGTCCTCTTGCAGCCACCTGAGCTTTGAGAATGGCTGCCTTCCCCCTTCCTGCTCCAGATCCCTGGTTCTTGTTTTTCATGCTCTTTAACATAGGGGCGTTTTTTAACATGTCCGGTAGGATCAGGAAGCGAATCTTGCTGCCCCGGATATAGACCTGCTCCAATTGGGCTACACGGCCATCCCGATGCGTCACAGTGATATTGGACATCTGAAAGGAAGCGACATACACTTACAACACAACTCAAAAAGGGACAAACACA

Function

NR:

description
small nuclear ribonucleoprotein Sm D3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2467740 True 493 lncRNA 0.42 2 17136245 17136879

Neighbor

gene id symbol gene type direction distance location
LOC110509722 LOC106563145 coding upstream 97543 16987866 ~ 17038702 (+)
LOC110509336 LOC106563121 coding upstream 187170 16900728 ~ 16949075 (+)
clic3 LOC106563124 coding upstream 258214 16812866 ~ 16878031 (+)
pou5f3 LOC106563125 coding upstream 276439 16855976 ~ 16859806 (+)
npdc1a npdc1 coding upstream 293011 16799642 ~ 16843234 (+)
LOC110509731 LOC106563154 coding downstream 254216 17391095 ~ 17394366 (+)
LOC110509337 noc4l coding downstream 258971 17395850 ~ 17399424 (+)
LOC110509732 vps29 coding downstream 263364 17400243 ~ 17406305 (+)
LOC110509733 LOC106566318 coding downstream 275682 17412561 ~ 17415939 (+)
arpc3 arpc3 coding downstream 279174 17416053 ~ 17419229 (+)
G2158427 LOC106563119 non-coding upstream 42736 17070687 ~ 17093509 (+)
G2158420 NA non-coding upstream 72333 17063503 ~ 17063912 (+)
G2158313 NA non-coding upstream 93266 16957456 ~ 17042979 (+)
G2158312 NA non-coding upstream 178847 16957039 ~ 16957398 (+)
G2157996 NA non-coding upstream 250871 16885059 ~ 16885374 (+)
G2158467 NA non-coding downstream 59843 17196722 ~ 17197415 (+)
G2158459 NA non-coding downstream 61580 17198459 ~ 17200589 (+)
G2158460 NA non-coding downstream 64057 17200936 ~ 17202539 (+)
G2158465 NA non-coding downstream 66028 17202907 ~ 17203208 (+)
G2158461 NA non-coding downstream 67670 17204549 ~ 17205124 (+)
G2157602 NA other upstream 782580 16350717 ~ 16353665 (+)
G2155696 NA other upstream 2042296 15018627 ~ 15093949 (+)
G2154512 NA other upstream 3200426 13915670 ~ 13935819 (+)
G2154438 NA other upstream 3322275 13806013 ~ 13813970 (+)
G2154391 NA other upstream 3360111 13772708 ~ 13776134 (+)
G2158499 LOC106563144 other downstream 52465 17189344 ~ 17191128 (+)
LOC110509751 LOC106563328 other downstream 1923664 18962089 ~ 19065920 (+)
LOC118945267 NA other downstream 1929299 19066137 ~ 19068784 (+)
LOC110509753 LOC106563373 other downstream 1999790 19136428 ~ 19138160 (+)
LOC110509766 LOC106566689 other downstream 2474010 19609602 ~ 19616511 (+)

Expression


Co-expression Network