G2159061 (vps29)


Basic Information

Item Value
gene id G2159061
gene name vps29
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17404925 ~ 17405521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2468401
AACGGCTTAATCTGTAAAAATGCCTCCATTACCTTTCCAGTGCGTTGTAGGCTCCAGTTGCTGAGCCGGGGTTGATGTAGAACTTGTTCTCGTTTTCGAAGGCCTCGAACTTGTGCGTGTGTCCAGAGATGAGGATGTCGACGTCAAGCTGCCTCTGCAGCAGGGCCAGGCTTGCCATGTCCCCCCAGGGGATCACCTGGTGCCCATGGATCAGGCCGATCTTAAACTGACCCACTGTCACCACCTTCTGCTCCGGGTAGTTCAGGTTCTCATCAAAGTCTCCCCTAACGATGTGTACATCCCCAGCCAGGGTCTTCAGGTAGTCATAGCTCTCCTTGGTGCAAAGGTTGCCTGTACAGAGGATGTGCTGGATTTTTCCTGGCACTAGCAGCTTCTTGAACTTGGCTGGAAGGGTATTGCATCGGTGGGGGATGTGCAGGTCACCTAACACCAGGACCAACTGTCATCAAA

Function

symbol description
vps29 Predicted to enable metal ion binding activity. Predicted to be involved in endocytic recycling; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in endosome membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS29 (VPS29 retromer complex component).

NR:

description
vacuolar protein sorting-associated protein 29 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2468401 True 471 lncRNA 0.53 2 17404925 17405521

Neighbor

gene id symbol gene type direction distance location
LOC110509730 LOC106563153 coding downstream 21452 17340761 ~ 17383473 (-)
LOC110509728 LOC106566295 coding downstream 69865 17204035 ~ 17335060 (-)
specc1lb LOC106563144 coding downstream 204133 17170684 ~ 17200792 (-)
adora2ab LOC106563117 coding downstream 255666 17144252 ~ 17149259 (-)
LOC110509725 LOC106563120 coding downstream 265315 17136250 ~ 17139610 (-)
LOC110509734 ub2g1 coding upstream 13758 17419279 ~ 17425513 (-)
LOC110509735 LOC106563157 coding upstream 22884 17428405 ~ 17477564 (-)
LOC110509737 LOC106563158 coding upstream 111568 17517089 ~ 17597551 (-)
LOC110509738 LOC106563159 coding upstream 270911 17676432 ~ 17800749 (-)
LOC110509743 LOC106563163 coding upstream 1092411 18497932 ~ 18722649 (-)
G2159013 NA non-coding downstream 95174 17309535 ~ 17309751 (-)
G2159011 NA non-coding downstream 96617 17308046 ~ 17308308 (-)
G2158999 NA non-coding downstream 108157 17296522 ~ 17296768 (-)
G2158990 NA non-coding downstream 118917 17285804 ~ 17286008 (-)
G2158985 NA non-coding downstream 123303 17281302 ~ 17281622 (-)
G2159064 NA non-coding upstream 7061 17412582 ~ 17413387 (-)
G2158954 arpc3 non-coding upstream 10541 17416062 ~ 17418738 (-)
G2159711 NA non-coding upstream 685788 18091309 ~ 18091633 (-)
G2159735 NA non-coding upstream 706049 18111570 ~ 18111820 (-)
G2159759 NA non-coding upstream 725004 18130525 ~ 18130733 (-)
G2158111 akna other downstream 758328 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 796919 16607625 ~ 16608006 (-)
G2157743 NA other downstream 981504 16421677 ~ 16423421 (-)
G2157715 NA other downstream 1018880 16381190 ~ 16386045 (-)
G2155120 NA other downstream 3173919 14227820 ~ 14231006 (-)
LOC110509757 LOC106563370 other upstream 1870747 19275539 ~ 19277044 (-)
G2162005 NA other upstream 2579024 19984545 ~ 19984779 (-)
G2162127 NA other upstream 2677624 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 2682709 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 2903668 20309189 ~ 20309802 (-)

Expression


Co-expression Network