G2158954 (arpc3)


Basic Information

Item Value
gene id G2158954
gene name arpc3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17416062 ~ 17418738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2468293
TTGACCAAACGTAATCACAACTGCTGGTACTACTGAATACTACACAGTGCAGCCTAAAACACTAATGTACGGTTGGTGTGGCACCTCTATCAGTCTACTCAATAGTGTTACTAATACTGAAAATAAATATTACTGTAGTTTCCTTACCTTCTTCCTGCTTGTTGCTGGGCTTTGCATACATGGCGTTGAGAGGGAAACCAGGTTCTCCAGGGATGGGGAAGTTGGTGATGCCCAGGGTGtacatctccttctctccctgaccCCTGGAGCTGCACTGCAAGGGGAGTTCACCATACAAAACAAATCATGTCTTTGAATTGTTCAGAGGACCCAACATTCCATATCActaaggggggagggggggtcattTGGAATCAATAGCTATTTGCTTTATTAGAAAAGCCCATTGGCAATCAATTAATTTCATTTTGTTACCTTCTGTAGCTTCTTCAGGCATTCAGAAATGTACAGGGTGACGTAGATCAGTGTCCTGTCTGCCTCGTtCTTGATTTCATAATTCTTAAAGAAGACATTAGCTTTGAAATAGTAGATGGCCTCCTCAATGATGTCTGAATCTTTGGTCTCTTTCGCTGCAGGGCCCTTGAATTGGGTTTTTAGTGGCAGCATAGCCATGTTCCCCACCATCTTGGTGTCCCCATCCATCAAGCCAGAGTGGTACGCCGGCATTTTGAGAGACTAATGTAAATATTTCAGCCCCAGCAAACTAAAAATGTAAGCGTTTGTAAGGACACTACTGCTACTCGCGCTGCTGCTGCTTCCGCCT

Function

symbol description
arpc3 Predicted to enable actin binding activity. Predicted to contribute to actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC3 (actin related protein 2/3 complex subunit 3).

NR:

description
Actin-related protein 2/3 complex subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2468293 True 784 lncRNA 0.45 4 17416062 17418738

Neighbor

gene id symbol gene type direction distance location
LOC110509730 LOC106563153 coding downstream 32589 17340761 ~ 17383473 (-)
LOC110509728 LOC106566295 coding downstream 81002 17204035 ~ 17335060 (-)
specc1lb LOC106563144 coding downstream 215270 17170684 ~ 17200792 (-)
adora2ab LOC106563117 coding downstream 266803 17144252 ~ 17149259 (-)
LOC110509725 LOC106563120 coding downstream 276452 17136250 ~ 17139610 (-)
LOC110509734 ub2g1 coding upstream 541 17419279 ~ 17425513 (-)
LOC110509735 LOC106563157 coding upstream 9667 17428405 ~ 17477564 (-)
LOC110509737 LOC106563158 coding upstream 98351 17517089 ~ 17597551 (-)
LOC110509738 LOC106563159 coding upstream 257694 17676432 ~ 17800749 (-)
LOC110509743 LOC106563163 coding upstream 1079194 18497932 ~ 18722649 (-)
G2159064 NA non-coding downstream 2675 17412582 ~ 17413387 (-)
G2159061 vps29 non-coding downstream 10541 17404925 ~ 17405521 (-)
G2159013 NA non-coding downstream 106311 17309535 ~ 17309751 (-)
G2159011 NA non-coding downstream 107754 17308046 ~ 17308308 (-)
G2158999 NA non-coding downstream 119294 17296522 ~ 17296768 (-)
G2159711 NA non-coding upstream 672571 18091309 ~ 18091633 (-)
G2159735 NA non-coding upstream 692832 18111570 ~ 18111820 (-)
G2159759 NA non-coding upstream 711787 18130525 ~ 18130733 (-)
G2159764 NA non-coding upstream 714492 18133230 ~ 18133563 (-)
G2159779 NA non-coding upstream 724069 18142807 ~ 18143256 (-)
G2158111 akna other downstream 769465 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 808056 16607625 ~ 16608006 (-)
G2157743 NA other downstream 992641 16421677 ~ 16423421 (-)
G2157715 NA other downstream 1030017 16381190 ~ 16386045 (-)
G2155120 NA other downstream 3185056 14227820 ~ 14231006 (-)
LOC110509757 LOC106563370 other upstream 1857530 19275539 ~ 19277044 (-)
G2162005 NA other upstream 2565807 19984545 ~ 19984779 (-)
G2162127 NA other upstream 2664407 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 2669492 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 2890451 20309189 ~ 20309802 (-)

Expression


Co-expression Network