G2158645


Basic Information

Item Value
gene id G2158645
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17428410 ~ 17432052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2467937
TTCACAATTTTATTTCTGCAGTGCCTTTCAAACCAGAAATGTTCACACAGACATTGTAATAATAGTGTGTCGTTTTTTCCTCCTTTTTACAGGCTTAAATGTACAGTCAGAGATATAGCTCCAACAACAGTCTAAAACTGATAGTAGGGAAAGTTTCTATTTCTAATACTTTTCTTTGGATGGGTGGGGAAATTCTGTCCATGCTTTGTAATATACACACATTCAGAGAAATAACTTCATTTACTATCCTTATGTACAAGTGATACTGCGATAGTATGGTCAATATTCAAATCAGCAGTGTGGAAGAAACTTTCAGGTGTACTGCATTTATAAAGCCAAAAGAAAAACGGCAAACGTCTTTAAGTTGGCAAAACCTTGTTTTCAGTCATATCCATTATGGAAATAGTGGGTATCATTAGTGTCACATAAGCACTGGAGTGCAGATCAAGCTTTTACTTCATGGGCCTTTTCAATCAACCCGCCTTGTTGTCAAGAAGTTGTCATTCTTCTTCAGAGTGACTTACATGACATAGGTTGCTTTAGATTCTTACACAACATTAGGATGGCTGCTAGGCTACTGGTCGTAAGAAACTAAACAAGTGACACGTATAAAATAAAAGGTCTACCATTGCCTTGCTACCTGCCACTCATTGAACATTTCCCATTTTATAACAACTGATCAGGTGATGAAAGCCATTTGAGTCACTAGACTTGACCACATCATTCATCTGGGATGTATAATATAAACTAGACATTTACTCTGTATGCTTGTTGTACATTTTGAGTCACTAGACTTGACCACATCATTCATCTGGGATGTATAATATAAACTAGACATTTACTCTGTATGCTTGTTGTACATTTTGAGTCACTAGACTTGACCACATCATTCATCTGGGATGTATGATATAAACTAGACATTTACTCTGTATGCTTGTTGTACATTTTGCTGACTGGTGAAAAGGCAAGAAAGCATCTATGGGCAAACCAGAATATTCAGACAATCTCCACAGGGGAAAATGCTCCCCTGCTCTTGTTTCTGTTAGTTCCCTGTAGTGAGGAAATAAAAGTCATTCATTCACTCTTTGAAACAGTTTCACACAAATgcatacacaaaacacacacgctTCTTCGAGTGGGTAGAGGTTGCCTCTAACCACCGGTCCATTGCACAGTGAGATATTTTGTCCATCCCCTATTGGTTATTACTGAGGATACAAGCTATGGTTAGGGAAATATCCACCCACCTCTAATATAAATTCCACAACCGATCCACTACAATTCAATAAACTGTACTGCTTTTCAAAATTCAACACAAGCATCAGTCCTCATTTTGGCTACTCAatacaacaaaaatattttttcagTTACACATTTagcatttttcttatttttttccttcttcttcAAAAAGGCACCTTTCAAAGTTTAATAGCTTATGACATTTCCCTGTCAAGATTAAGACAACCATCACACTTCAACATCTGACAACGAATAAACAAAACACAAAACTGCCTAAAACTACAATAAAAACCATAGAAATAACTCCCAAAACAAGATTGTCTCCAAGCATGTACATGAAAAACAGAACATATATGTTTCATGTACATCTTAtaactcacccccccccccccccccccccccccgccttgtTCTTTCTGTACAGTACTGATAAACCTCAACACAGTGCAATAACACCAGTAGTCATTGACAGGTGTAGTCCAGTCTGGCAACTCTACTGCAAGTTTTACAAGCAGACCTACATTGAAACTGATTGTGACAAAGAGGTTTGAATGGGAAAATATGAAAGAAATTAAGCTCAACTAAATCTCACCTATTTGGTTAGAGATCAGTGGCAATTGGTTTCTTTTCCAATTTGGGTAATATTCCTTTGTCTAATTTGTCTACAAAGTGATATTCCTGGCTTTTTACTGGTTAAGAACAACTTTAGGAAATAATAATAAGATGATGATTCATCTCAAGCACTCTGACTAAAAAGCTGAATGGGGAGTATGTGGTTCCAGCTGTTCTTCCAACATGGCTGGTCAAAAGGAAATGCTCAGCGAGGCCCATTTCCTGTCCATATTTAACATCCTGTCAAAGGCCCAGTGGCACAGACAGCAAACCTTTCTAGATTCTCCTGTCTATGGTCCAACAATCTACCTACTGGGCAACATTCTCATTCTTAATATGGCAAATGAAGCATCAATAAAGTGTCAGACAGGGATAAATAAGGTAAAACACTTCTGTAACAGCACCTATATATTGTTCTATCTATCACAGGTAAGGTCCATAACTTAAAATGACTTATTTTCTACATACAACTCAGAATGTACACAAACAGGCCAGTGGGCTGTGACAGGCCATGCAATTGGGATAACGTTCTTAAACTCTTGTGGTTTCCCTGAAAAACACACCAAAAAAAGATCTATATTATATTTTTACACTGAGTGGCTTCTTATTTAGTAAGACTTCATGTCTTAGGAGTGAAGTTTCATTTGTGATTGCTTTGCGCTGAATTACTGACAGGATTAAATGGAGCGAGACTGTGACTGCAGTAGCATCGTCCTGCAGACAGCTTGACTGTGATTGGTCAGGGTATCGTTCCAGACGGtaaggggctgtgtgtgtgtgtggctctgcaGAGAGTCAGTCCGTTTAGTGGGGTCCTGTCTGACACACAGAGGAGTGTGTAGTTGCCCCCCCACAAGCCCTTCATCTCCAACATCAGTTCACCTAAGAGTGCTTGGTGGTGGGGCAGACACAGAAACCACCAGTCCAGAGTCTACCCTGTCCAGACTATAGGCCCTTCTTAACACACATACCCCCCACCGGCTGACATCTCCATGGAAACTAGAGGGTGGGGGAAAGATACAGAGTTGGTTGGGAGGTTGAATGGGCATGGTGGTGCCGGTCCAGAATGAGTGACATCATAGCATAGCAGCATCAAGGGTGCTGAGCTGAGTCCTCAAACACATAGCCCTGACTGTAGAGCTGTGAGGCGACGCTCAATGCATTCCTTACCTGCCGAGAGAGAAAGTAGAAGTAGTAttattcattgattgattgatgttgtGAAAGGGACAACTCACTAAGCTACCAGTAAGTAAAAAAGAACAGCCAAAAGTGTCCAATTACCTGTGTAGTCATGGAAATAAAGTCATGCTTtatacaggtagcctagaggcaggtagcctagaggcaggtagcctagaggcaggtagcctagtggttagagtgttaggccACACAGATTAACATAAAGGAcgcaggttcaaatccccgagctgacaaggtgaacaaATCTggcaatgtgcccttgagcaaggcacttaaccctaactgctcctgtaagtcgctctggataagagtctgcaaAATTACTACAttgtaaaatgtaaaaaacaacaacagatacGCTACTGCAGTTCAGGCTTAATGGATGTGGTGGGACAGAGGTGAAAGTTCTGAGGTGCCTCACACTTGCTGACGCTGAGGATGTCGTTTTGCTCGGTAAGGAGCAAGGACAGGCCCTCCATCAGCAGCAGGGCCTTGTGGTAGCGCAGCACCGACGCCTCTCCCTGGTGGAACATCTCATCCAGAGCAGCAGCCT

Function

NR:

description
serine/threonine-protein kinase ULK1-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2467937 True 3613 lncRNA 0.41 2 17428410 17432052

Neighbor

gene id symbol gene type direction distance location
arpc3 arpc3 coding upstream 9181 17416053 ~ 17419229 (+)
LOC110509733 LOC106566318 coding upstream 12471 17412561 ~ 17415939 (+)
LOC110509732 vps29 coding upstream 22105 17400243 ~ 17406305 (+)
LOC110509337 noc4l coding upstream 28986 17395850 ~ 17399424 (+)
LOC110509731 LOC106563154 coding upstream 34044 17391095 ~ 17394366 (+)
LOC110509739 LOC106563160 coding downstream 843891 18275943 ~ 18282836 (+)
LOC110509741 LOC106563161 coding downstream 856686 18288738 ~ 18380940 (+)
si:dkey-1d7.3 LOC106563162 coding downstream 960887 18392939 ~ 18442193 (+)
LOC110509745 LOC106563165 coding downstream 1334427 18766479 ~ 18783952 (+)
LOC110509747 LOC106563168 coding downstream 1376760 18808812 ~ 18823742 (+)
G2158593 NA non-coding upstream 100615 17327504 ~ 17327795 (+)
G2158590 NA non-coding upstream 104667 17323509 ~ 17323743 (+)
G2158588 NA non-coding upstream 106582 17321523 ~ 17321828 (+)
G2158586 NA non-coding upstream 108363 17319847 ~ 17320047 (+)
G2158579 NA non-coding upstream 116898 17311264 ~ 17311512 (+)
G2158786 NA non-coding downstream 221281 17653333 ~ 17657658 (+)
G2158803 LOC106563159 non-coding downstream 334739 17766791 ~ 17789034 (+)
G2158872 sfswap non-coding downstream 357233 17789285 ~ 17800718 (+)
G2159319 NA non-coding downstream 369523 17801575 ~ 17801788 (+)
G2159320 NA non-coding downstream 370500 17802552 ~ 17901313 (+)
G2158499 LOC106563144 other upstream 237282 17189344 ~ 17191128 (+)
G2157602 NA other upstream 1074745 16350717 ~ 16353665 (+)
G2155696 NA other upstream 2334461 15018627 ~ 15093949 (+)
G2154512 NA other upstream 3492591 13915670 ~ 13935819 (+)
G2154438 NA other upstream 3614440 13806013 ~ 13813970 (+)
LOC110509751 LOC106563328 other downstream 1628491 18962089 ~ 19065920 (+)
LOC118945267 NA other downstream 1634126 19066137 ~ 19068784 (+)
LOC110509753 LOC106563373 other downstream 1704617 19136428 ~ 19138160 (+)
LOC110509766 LOC106566689 other downstream 2178837 19609602 ~ 19616511 (+)
G2161635 LOC106563312 other downstream 2309762 19741814 ~ 19752743 (+)

Expression


Co-expression Network