G2160098 (LOC100136012)


Basic Information

Item Value
gene id G2160098
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18385339 ~ 18386926 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2469473
gatacatcagaaaagcagaacttaatatttggtaccgaaacctttgtttgcaattacagagatcatacgtttcctgtagttcttgaccaggtttgcacacactgcagcagggattttggcccactcctccatacagaccttctccagatccttcaggtttcggggctgtcgctgggcaatacggactttcagctccctccaaagattttctattgggttcaggtctggagactggctaggccactccaggaccttgagatgcttcttacggagccactcctgttgccctggctgtgtgtttcgggtcattgtcatgcgggaagacccagccacgacccatcttcaatgctcttactgaggaaaggaggttgttggccaagatctcgcgatacatggccccatccatcctcccctcaatacggtgcagtcctcctgtcccctttgcagaaaagcacccccaaaGAATGaggtttccacctccatgctttacggttgggattgtgttcttggggttgtactcatccttcttcttcctccaaacaaggctagtggagtttagaccaaaaagctatatttttgtctcatcagaccacatgaccttctcccattcctcctctggatcatccagatggtcattggcaaacttcagacgggacatgcactggcttgaacAGGGGGGCCTTGCGTGCGCtgtaggattttaatccatgacggcatagtgtgttactaatggttttctttgagactgtggtcccagctctcttctggtcattgaccaggtcctgccgtgcagttctgggctgatccctcaccttcctcataatcattgatgccccacgaggtgagatcttgcatggagccccagaccgagggtgattgaccgtgatcttgaacttcttccattttctaataattgcgccaacagttgttgccatctcaccaagctgcttgcctattgtcctgtagctcatcccagccttgtgcaggcctaccattttatccctgatgtccttacacagctctctggtcttggccattgtggagaggttgaagtctgtttgattgagtgtgtggacaggtgtcttttatacaggtgacgagttcaaacaggtgcagttaatactggtaatgagtggagaacaggagggattcttaaagaaaaaataacaggtctgtgagagacggaattcttactggttggtaggtgatcaaatacttatggcatgcaataaaatgcaaattaattcgttaaaaatcatacaatgtgattttctggatttttgttttagattccgtctctcacagttgaagtgtacctatgataaaaatgacagacctctacatgctttgtaagtaggaaaacctgaaaaattggtagtgtatcaaatacttgttctccccactgtatatagagagagacatatagagcgaaagacacagagagcgagagagacatatatagagaaagagagagagagagacacatatagagagaaagacatataaagacatagagagaaagagagagaaagacatatagagagaaagagagagagagagacacatatagagagaaagacatataaag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2469473 True 1588 lncRNA 0.45 1 18385339 18386926

Neighbor

gene id symbol gene type direction distance location
LOC110509738 LOC106563159 coding downstream 584590 17676432 ~ 17800749 (-)
LOC110509737 LOC106563158 coding downstream 787788 17517089 ~ 17597551 (-)
LOC110509735 LOC106563157 coding downstream 907775 17428405 ~ 17477564 (-)
LOC110509734 ub2g1 coding downstream 959826 17419279 ~ 17425513 (-)
LOC110509730 LOC106563153 coding downstream 1001866 17340761 ~ 17383473 (-)
LOC110509743 LOC106563163 coding upstream 111006 18497932 ~ 18722649 (-)
LOC110509746 LOC106563166 coding upstream 399920 18786846 ~ 18804561 (-)
LOC118945262 LOC106563169 coding upstream 447487 18834413 ~ 18842206 (-)
LOC110509748 LOC100194644 coding upstream 455444 18842370 ~ 18848232 (-)
nefma nfm coding upstream 475024 18861950 ~ 18867753 (-)
G2160075 NA non-coding downstream 41397 18340842 ~ 18343942 (-)
G2160008 NA non-coding downstream 104357 18257333 ~ 18280982 (-)
G2159860 NA non-coding downstream 180693 18204200 ~ 18204646 (-)
G2159830 NA non-coding downstream 203956 18181018 ~ 18181383 (-)
G2159828 NA non-coding downstream 207386 18177740 ~ 18177953 (-)
G2160377 NA non-coding upstream 56560 18443486 ~ 18443718 (-)
G2160378 NA non-coding upstream 58313 18445239 ~ 18445452 (-)
G2160541 NA non-coding upstream 291074 18678000 ~ 18678251 (-)
G2160556 NA non-coding upstream 307931 18694857 ~ 18695236 (-)
G2160557 NA non-coding upstream 308398 18695324 ~ 18695739 (-)
G2158111 akna other downstream 1738742 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 1777333 16607625 ~ 16608006 (-)
G2157743 NA other downstream 1961918 16421677 ~ 16423421 (-)
G2157715 NA other downstream 1999294 16381190 ~ 16386045 (-)
G2155120 NA other downstream 4154333 14227820 ~ 14231006 (-)
LOC110509757 LOC106563370 other upstream 889342 19275539 ~ 19277044 (-)
G2162005 NA other upstream 1597619 19984545 ~ 19984779 (-)
G2162127 NA other upstream 1696219 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 1701304 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 1922263 20309189 ~ 20309802 (-)

Expression


Co-expression Network