G2160561


Basic Information

Item Value
gene id G2160561
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18704110 ~ 18704382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2469958
ACAATGCGATCCATTACAGTGCTCAAACAGTCAATCGCCTCCTTTTGTTCCCTGGCACATTCCTCCACCTCCATGGGcgtagtgtcctctcctgctgacttcatatttTTTGGTCAGATTtgggattttcccaaggttactgttgacgcatatcccacggtagttattggggtcaaatttgtctccacttttgtggattggggttatcagtccttggttccaaatattggggaagatgccagagctaaggatgatgttaaagagttttagtat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2469958 True 273 lncRNA 0.44 1 18704110 18704382

Neighbor

gene id symbol gene type direction distance location
LOC110509738 LOC106563159 coding downstream 903361 17676432 ~ 17800749 (-)
LOC110509737 LOC106563158 coding downstream 1106559 17517089 ~ 17597551 (-)
LOC110509735 LOC106563157 coding downstream 1226546 17428405 ~ 17477564 (-)
LOC110509734 ub2g1 coding downstream 1278597 17419279 ~ 17425513 (-)
LOC110509730 LOC106563153 coding downstream 1320637 17340761 ~ 17383473 (-)
LOC110509746 LOC106563166 coding upstream 82464 18786846 ~ 18804561 (-)
LOC118945262 LOC106563169 coding upstream 130031 18834413 ~ 18842206 (-)
LOC110509748 LOC100194644 coding upstream 137988 18842370 ~ 18848232 (-)
nefma nfm coding upstream 157568 18861950 ~ 18867753 (-)
LOC110509752 LOC106563351 coding upstream 364034 19068416 ~ 19070349 (-)
G2160557 NA non-coding downstream 8371 18695324 ~ 18695739 (-)
G2160556 NA non-coding downstream 8874 18694857 ~ 18695236 (-)
G2160541 NA non-coding downstream 25859 18678000 ~ 18678251 (-)
G2160378 NA non-coding downstream 258658 18445239 ~ 18445452 (-)
G2160377 NA non-coding downstream 260392 18443486 ~ 18443718 (-)
G2160563 NA non-coding upstream 904 18705286 ~ 18705581 (-)
G2160588 NA non-coding upstream 29516 18733898 ~ 18734259 (-)
G2160590 NA non-coding upstream 30446 18734828 ~ 18735222 (-)
G2161075 LOC106566461 non-coding upstream 150614 18854996 ~ 18856145 (-)
G2161122 NA non-coding upstream 224657 18929039 ~ 19010955 (-)
G2158111 akna other downstream 2057513 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 2096104 16607625 ~ 16608006 (-)
G2157743 NA other downstream 2280689 16421677 ~ 16423421 (-)
G2157715 NA other downstream 2318065 16381190 ~ 16386045 (-)
G2155120 NA other downstream 4473104 14227820 ~ 14231006 (-)
LOC110509757 LOC106563370 other upstream 571886 19275539 ~ 19277044 (-)
G2162005 NA other upstream 1280163 19984545 ~ 19984779 (-)
G2162127 NA other upstream 1378763 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 1383848 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 1604807 20309189 ~ 20309802 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G15836 NA non-coding NC_053113.1 CM020910.1 8918024 ~ 8920817 (-)