G2161075 (LOC106566461)


Basic Information

Item Value
gene id G2161075
gene name LOC106566461
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18854996 ~ 18856145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2470529
AAAAGTATTTATTCAACCATCCAAAACCACACTCTCACAGACTTGCACAGGCAtagcacacacactcttacacacacactagAGGAATTGTGTGACCTTTATTGATTTTATTGACTTATAACTGCTAGCAGATAACCTTGATTTTGATGCATTAGTGCACTAAAAGACATTGTATTGAGCACCTTGTTAACAAGCATACTGGAGTCGATAATGTTGGGTATTTCTGCTGTTTGCCGAGCTGAGGTTTTATTAGACTGTCTTTTGGCTTGTGTGGTCTTGGGCCACAAACTTACTTTTCAGCCTTTGGTATTTCAGATTAGTCTTTCTCTTCGGCAgatttttctctcttctcctcactctTGGACATCTCTGGTTCGCCCTTCCCTTCTTTGGTTTCTGAGTCGTCATCTTTTTTCTCCTCACTTTTACCTTCATCTTTCACCTCTTCATCTTTATCTCCCCCTTCTTTatcatctccACCTTGATCTCCATCCTTAGCATCCTCTccatcttccttctcctcctcgcctccctcatcctcatcttcctctttctcttctcccttttcctccttctcctctccaccctcttcttcctcctcctgtccctcctctttcttctcttctGCTTCTTCCTCTGCCatcgcctcctcttcctccttctccccctcttcctcctcctgtggtgggctggcaGAGTCCCGCTGGGCCAGGCTGGTAGAGATGATGTCTTCTCCAGAGACGAATGAGGAGCCGAGGAAGCGTGAGGTCATCAGGTAGGGGGCGCCAGAGCTCAGGCTTGACTGCATTGAGAACATGGAGCGGCTGAAGGAGGGCATGACTGACAAGCTGTGGCCATAGACATTGGACATACCCCCTGATCCGCCCACACTGAAGTGAGACTCCTCCCCCTC
>TU2470530
AAAAGTATTTATTCAACCATCCAAAACCACACTCTCACAGACTTGCACAGGCAtagcacacacactcttacacacacactagAGGAATTGTGTGACCTTTATTGATTTTATTGACTTATAACTGCTAGCAGATAACCTTGATTTTGATGCATTAGTGCACTAAAAGACATTGTATTGAGCACCTTGTTAACAAGCATACTGGAGTCGATAATGTTGGGTATTTCTGCTGTTTGCCGAGCTGAGGTTTTATTAGACTGTCTTTTGGCTTGTGTGGTCTTGGGCCACAAACTTACTTTTCAGCCTTTGGTATTTCAGATTAGTCTTTCTCTTCGGCAgatttttctctcttctcctcactctTGGACATCTCTGGTTCGCCCTTCCCTTCTTTGGTTTCTGAGTCGTCATCTTTTTTCTCCTCACTTTTACCTTCATCTTTCACCTCTTCATCTTTATCTCCCCCTTCTTTatcatctcctccTTGATCTCCATCCTTAGCATCCTCTccatcttccttctcctcctcgcctccctcatcctcatcttcctctttctcttctcccttttcctccttctcctctccaccctcttcttcctcctcctgtccctcctctttcttctcttctGCTTCTTCCTCTGCCatcgcctcctcttcctccttctccccctcttcctcctcctgtggtgggctggcaGAGTCCCGCTGGGCCAGGCTGGTAGAGATGATGTCTTCTCCAGAGACGAATGAGGAGCCGAGGAAGCGTGAGGTCATCAGGTAGGGGGCGCCAGAGCTCAGGCTTGACTGCATTGAGAACATGGAGCGGCTGAAGGAGGGCATGACTGACAAGCTGTGGCCATAGACATTGGACATACCCCCTGATCCGCCCACACTGAAGTGAGACTCCTCCCCCTC

Function

NR:

description
neurofilament light polypeptide-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2470529 False 913 lncRNA 0.48 2 18854996 18856145
TU2470530 True 913 lncRNA 0.48 2 18854996 18856145

Neighbor

gene id symbol gene type direction distance location
LOC110509748 LOC100194644 coding downstream 6764 18842370 ~ 18848232 (-)
LOC118945262 LOC106563169 coding downstream 12790 18834413 ~ 18842206 (-)
LOC110509746 LOC106563166 coding downstream 50435 18786846 ~ 18804561 (-)
LOC110509743 LOC106563163 coding downstream 132347 18497932 ~ 18722649 (-)
LOC110509738 LOC106563159 coding downstream 1054247 17676432 ~ 17800749 (-)
nefma nfm coding upstream 5805 18861950 ~ 18867753 (-)
LOC110509752 LOC106563351 coding upstream 212271 19068416 ~ 19070349 (-)
LOC110509754 LOC106563372 coding upstream 295875 19152020 ~ 19153708 (-)
LOC110509755 LOC106563327 coding upstream 361198 19217343 ~ 19224878 (-)
LOC110509757 LOC106563370 coding upstream 419394 19275539 ~ 19277044 (-)
G2160590 NA non-coding downstream 119774 18734828 ~ 18735222 (-)
G2160588 NA non-coding downstream 120737 18733898 ~ 18734259 (-)
G2160563 NA non-coding downstream 149415 18705286 ~ 18705581 (-)
G2160561 NA non-coding downstream 150614 18704110 ~ 18704382 (-)
G2160557 NA non-coding downstream 159257 18695324 ~ 18695739 (-)
G2161122 NA non-coding upstream 72894 18929039 ~ 19010955 (-)
G2161212 NA non-coding upstream 206200 19062345 ~ 19065914 (-)
G2161225 NA non-coding upstream 232998 19089143 ~ 19089464 (-)
G2161228 NA non-coding upstream 236937 19093082 ~ 19093356 (-)
G2161230 NA non-coding upstream 241126 19097271 ~ 19097660 (-)
G2158111 akna other downstream 2208399 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 2246990 16607625 ~ 16608006 (-)
G2157743 NA other downstream 2431575 16421677 ~ 16423421 (-)
G2157715 NA other downstream 2468951 16381190 ~ 16386045 (-)
G2155120 NA other downstream 4623990 14227820 ~ 14231006 (-)
G2162005 NA other upstream 1128400 19984545 ~ 19984779 (-)
G2162127 NA other upstream 1227000 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 1232085 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 1453044 20309189 ~ 20309802 (-)

Expression


Co-expression Network