G2160962


Basic Information

Item Value
gene id G2160962
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19357847 ~ 19362158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2470401
TCATAGCTGCTCCAACACGTGTATTTACAAATAATGGCCTTCGTATGAAATACATTTGCAGAAAAATCTGGTAAAGCGAGTTAGaccaggaagagagggaagagttaCAACAGTCTGGGGAGGTGAGGACAATAGGTCTGGGACaagaggacagggacagaggccAGGGGAAAGTGGACATGTACAAAGGCCAGGGGACAGTGGACATGGACagaagacagggacagaggacaggggacagatacatacagtaggacagggtACATAGGAGGGCACAGTGACATTAGGTTCAGGCTAAATGGCTACAGTAACAGGTACCAAATTCAGGTGAAGAGCTCCTCTAATCAGACTCACTGTTCACCCTGTAACAAAACTGCATCTAATACTCTACATCAACGGTTGAATAGAAAATTACAGTTAACTGATTTAGGACATTGTGATATGCACAGAAAACCAGCACTCAACAAGCTTTACAAAAAAATGGACATTCCATCTCCTGAATTCAGGTACAACAACATGGTGCTACTGACTACTGAAGCTTCATCTGAAACCATTGGAGAGACCACAGACAAACTAAGCAGGTACAAGAACTCAAAACATCAGGCACCTAAACCACATTCCAGATGAAAATACTACTAAGTAAAGGTCTGGTCAAAAGGGGAGAGCGATAGGAGTGTGGTCTGGTTCTTGGAATGGGCATGGATGGATATAGTGCACTTCCAATAGCAGAGACCTTAACTtcaacctccacacacacacacacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacactgcacagctGATATTTGAGACGCTTACACATAATGCTAACTGCACGGTGGATTCAGAATTGACAGATATAGACTGTAACATTGATCATGTTTCTCATACAAAAAGACATTTAGAAATGAAATCAaccgttttttttaaatatcaaacatttacatttttctcactaacaacattaacaatgtctcccTTAAATCTGGTTGCCCTTCAAAGAAGTGTGAGAATCACTGCTCTAACACTGTACGTTCTATTAGACTATGGCTGGATACACAGTACCCATAAGACAAGGTGATCCGTATTTCCCAATGTTGCCCGAAGTGAATGTCGGTGACAATGAATTTGTACTTTTCCTATCTACAGATTTGGTCAAACTAAATGTATTTCTCACTGATAGTCCATTCAACCCTTTACAAAGGAGGTGAGTGAGTGTCAGTACACTAAATAGACTGTGTATAAGTAAGTGAAGGGactgaggaaaatatttactgagTGTTCCTGGGTTTGAGAAGCCGAATTCTATTGATCTCAGCTGGGgcctctctctcacctcatcaCTCACTCCGGTCCTCTGGGCTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAACCTATCCTGAGGCTGAACAGGACACCTCTCTCGTCCCTGCTAGTGAACCTATCCAAAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCACCTCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCGTCCCTGCTAGTGAACCTATCCAAAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAACCTATCCAAAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCACCTCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCACCCCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTAAAcctatccagagactgaacaggACACCTCTCTCACCCCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTAAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGCTAGTGAACCTATCCTGAGGCTGAACATGACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGGTAGTGAACCTATCCTGAGGCTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggACAACTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGATGTGAACCTATCCTGAGGCTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggATACGTCTCTCGCCCCTGCTAGGGAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggATACGTCTCTCGCCCCTGCTAGGGAAcctatccagagactgaacaggACACCTCTCTCGCCCCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAACCTATCCTGAGACTGAACAGGACACCTCTCTCGCCCCTGCTAGTGAAcctatccagagactgaacaggacacctctctccctctctctcctggtggtcTTTTCTTTTTCCATTCCAGAAATAACCAACGCATGGCCACCCAGCATGTGGTCTGCAAGGACGCTGCTCCACACGACATCAAAGACACGGCTAAATCATACCAGAGCTGCAGCTGCTATAGAGGAACCTTATGTCCACAATGTTACCACAACCTTCCTGCAAAGTTAGGAGAACTGCGGGGACGTGTGGGCGGATCATCACTGCATGGTCGCTAACCtatcaatatcaatatcaatGCAAGTGTGTGCTGTTTGCCTGGAAGAACCCAAGAATACTACTAAAAACATAATTGAAACTAATCGTGTTAGCTACAGAATGGGGTCATCCCTGTACCTTGTGTTTATAAACGTAAATGTAGTTTGGTAAAGGTTATGACAATGTTTCCAAATGAAGTAGTGGATTGTAATATGGGCTGACTTGTTAGCACGCATATCGTTTGTGTTTACTGTTACAGAGAAGATCACAGTTATAACTCACATTCCTACACCCTGATACAACAAGCGACTCTCTGTCCTCTTCCCTGAACTCAGCTGGATAAAAACAATCCAATTCAATTACATTTTGAGTCCAAGCCCAGATATTTAATGTGTACGAGTAATGAAATACCTGTCTTAAACAAAAAGAGAGACTGATGCTTTTTAGTGGTGGGATGTTTTGGGCTTCTCTCTGCTGTAGTTACAGTGACAGAACCAGGACAGTAATCAGAAAAGGGACAGAGCACGAGGACTCAAGAATAAATAGGAAAATACATTTGCCTGACAAAATACCATATCAGCTCCCACGCTCCTCGCAAATATACACCCGTGTTGGCTGCTAAACTTGAATTATGTGATTTATTTCAAAAATACATTAATCAATCACTAATTCCCCTAAAAGGACAGAAAGTACTAAACATGGGGGCTTATTTTTTCCGGTTAATCTCAAACAtcctctcccagtctctgagTCATTGAATCCAACCCCCATCACCTGAGAGGAACTTCTAAAGGACTCTTCAAAGGAAAGAAAACAACAGACAACCCTCCGCTTGGCAACAGGATTTCTCCAAGCTACAACCATGGCTTTGGATCCTTGTTTCACCGTTGATTGGCCAGCATGCCTTGTCCTCATTTTATTGGCCAGTATACCTTGGCCTCATTGCCATTGGCTGATCTGATCAGTCACGAGCCTTCTTCAAACGATCAATTGTCATTTGCCACAAGACTTCATCATATTCTCAATCAAAGTCATTTGggggtttggaaaatgtttttgttcCGTAGTTTAATCTTGCAAAATGTTTGGTGTGgcaacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2470401 True 4279 lncRNA 0.47 2 19357847 19362158

Neighbor

gene id symbol gene type direction distance location
LOC110509758 LOC106563369 coding upstream 76361 19279996 ~ 19281486 (+)
LOC110509338 LOC106563371 coding upstream 84485 19271624 ~ 19273362 (+)
ghr ghr2 coding upstream 107945 19227039 ~ 19249902 (+)
trnac-gca-162 NA coding upstream 138413 19219364 ~ 19219434 (+)
c6 c6 coding upstream 153276 19170068 ~ 19204571 (+)
LOC110509761 LOC106563368 coding downstream 170034 19532192 ~ 19534613 (+)
LOC110509762 LOC106566653 coding downstream 173505 19535663 ~ 19560763 (+)
tjp2a LOC106563322 coding downstream 201363 19563521 ~ 19599545 (+)
LOC110509766 LOC106566689 coding downstream 247444 19609602 ~ 19616511 (+)
LOC110509769 smc5 coding downstream 257488 19619646 ~ 19626660 (+)
G2160912 NA non-coding upstream 62307 19289370 ~ 19295540 (+)
G2160856 NA non-coding upstream 175328 19181877 ~ 19182519 (+)
G2160854 NA non-coding upstream 179384 19178118 ~ 19178463 (+)
G2160827 NA non-coding upstream 213157 19144441 ~ 19144690 (+)
G2160823 NA non-coding upstream 218017 19139615 ~ 19139830 (+)
G2161424 NA non-coding downstream 73942 19436100 ~ 19436303 (+)
G2161431 NA non-coding downstream 77490 19439648 ~ 19439928 (+)
G2161436 NA non-coding downstream 80421 19442579 ~ 19442814 (+)
G2161445 NA non-coding downstream 85826 19447984 ~ 19448185 (+)
G2161458 NA non-coding downstream 95999 19458157 ~ 19458362 (+)
LOC110509753 LOC106563373 other upstream 220279 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 289063 19066137 ~ 19068784 (+)
LOC110509751 LOC106563328 other upstream 292075 18962089 ~ 19065920 (+)
G2158499 LOC106563144 other upstream 2166719 17189344 ~ 17191128 (+)
G2157602 NA other upstream 3004182 16350717 ~ 16353665 (+)
G2161635 LOC106563312 other downstream 379656 19741814 ~ 19752743 (+)
G2161678 NA other downstream 433102 19795260 ~ 19797774 (+)
LOC110509811 LOC106563272 other downstream 1835760 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 2238260 21600418 ~ 21601052 (+)

Expression


Co-expression Network