Gene
RNA
| Item | Value |
|---|---|
| gene id | G2161833 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 19626538 ~ 19626973 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: structural maintenance of chromosomes protein 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2471446 | True | 396 | lncRNA | 0.42 | 2 | 19626538 | 19626973 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509765 | LOC106563324 | coding | downstream | 15313 | 19599862 ~ 19611225 (-) |
| LOC110509339 | NA | coding | downstream | 107638 | 19514805 ~ 19518900 (-) |
| LOC110509760 | LOC106563325 | coding | downstream | 117709 | 19502531 ~ 19508829 (-) |
| LOC110509759 | LOC106563326 | coding | downstream | 217095 | 19307783 ~ 19409443 (-) |
| LOC110509757 | LOC106563370 | coding | downstream | 349494 | 19275539 ~ 19277044 (-) |
| pmchl | LOC106563365 | coding | upstream | 89090 | 19716063 ~ 19716692 (-) |
| LOC100136307 | LOC106563312 | coding | upstream | 111612 | 19738585 ~ 19785892 (-) |
| LOC110509772 | LOC106563313 | coding | upstream | 153083 | 19780056 ~ 19792894 (-) |
| LOC110509773 | LOC106563311 | coding | upstream | 180287 | 19807260 ~ 19835269 (-) |
| LOC110509775 | LOC106563308 | coding | upstream | 210262 | 19837235 ~ 19840684 (-) |
| G2161832 | NA | non-coding | downstream | 57 | 19625942 ~ 19626481 (-) |
| G2161831 | NA | non-coding | downstream | 678 | 19625357 ~ 19625860 (-) |
| G2161830 | NA | non-coding | downstream | 3961 | 19620986 ~ 19622577 (-) |
| G2161828 | NA | non-coding | downstream | 9254 | 19616642 ~ 19617284 (-) |
| G2161780 | NA | non-coding | downstream | 91882 | 19533628 ~ 19534656 (-) |
| G2161834 | NA | non-coding | upstream | 290 | 19627263 ~ 19627697 (-) |
| G2161860 | NA | non-coding | upstream | 46138 | 19673111 ~ 19673665 (-) |
| G2161861 | LOC100136690 | non-coding | upstream | 47006 | 19673979 ~ 19674409 (-) |
| G2161862 | ccnb1 | non-coding | upstream | 48024 | 19674997 ~ 19676493 (-) |
| G2161870 | NA | non-coding | upstream | 56853 | 19683826 ~ 19684056 (-) |
| G2158111 | akna | other | downstream | 2979941 | 16643681 ~ 16646597 (-) |
| G2158088 | LOC100136012 | other | downstream | 3018532 | 16607625 ~ 16608006 (-) |
| G2157743 | NA | other | downstream | 3203117 | 16421677 ~ 16423421 (-) |
| G2157715 | NA | other | downstream | 3240493 | 16381190 ~ 16386045 (-) |
| G2162005 | NA | other | upstream | 357572 | 19984545 ~ 19984779 (-) |
| G2162127 | NA | other | upstream | 456172 | 20083145 ~ 20083618 (-) |
| LOC110509788 | LOC106563294 | other | upstream | 461257 | 20088225 ~ 20093695 (-) |
| G2162405 | LOC106563289 | other | upstream | 682216 | 20309189 ~ 20309802 (-) |
| G2162422 | LOC106563345 | other | upstream | 702775 | 20329748 ~ 20330138 (-) |
