G2162087


Basic Information

Item Value
gene id G2162087
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20008474 ~ 20011382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2471739
CAACCTGTCCATCAACTTGGCACGGGTTGCTTTTTTATTTGATCAGAAAGAAccaattgaagaaaaaaaaacagtcaaCTAGTTAAGCGCTATTATATGTGTGTGATAATCTAATGGTGCTATTTACTGGCAGCCACCGACAAAAAGAGTTTTACAAAAGAAGAGGAAGAATGAGTATCAGATGCAAATGTATCAGTAATTCTATCCAGATAAACAAGAGTCTTCTTTCTCTCCACACATGAGCACTACTACCCGCCACCTAGTCCCGCGTTGCCATACCTCCAAAATCACGTCGTTGTCACACCTGTTTTAGGGAAGCCTGGTTCAAGACAAAGCTACACGTCCTCGAATACCTGTCCTCCTACACACTTTCTCATTGAGACGTTTGTGTATCAACAGTTTTAATAAGATGCAACATTTTTCCATAGACACCCCGCACATTGTTGTTCCCCACAACGTAAACACCGCGTCAAATATGGCTCTTTGATTGATGTTGAAGAAATGGTTTAAATTTAACACCGGTTTCAACCACAAATCAACAAGAGGGTTTTACTGTTTGGTTGATTTTTAAATTTAATTCATGTTTGCTGACAACAACAAATATGAATCCAAATGTGAAATATTTGCCCAGTTTTAACCAAAGTAAGAATTATTTATATTTTCCTTCACTTTCTAAATATCTGCTATACTGGAAAAGAGGTTGTTTAGAAGTAATATAAGTTTATAAGCTCCCAACTGTGCCATGCTGTTATGAGAATTTCgttatcaatgttcataaacttcAATTCATCTACTCAGTCTGCAACCCAGAGTTTGTAAGATTCTGGTTGAAAAACATGCAAAACCCGACTTGGAGGCACCCTGCACCCAAAAGCTGTTCAGTCAACATCCTGACCCATAACATCCACCTGCATAGAGGTGACTGCTTTCTAAATCAAGTCAACTTTGTTCAACAAGATGCTAATATAACATGTTAAAACCACCCTACTACTGATGACCCTCATCTGGATCAACCCTGGAATACAATGGAATGAAAAAGCAAGGCTAAATGAATCACAAGGTAAAACACCACAAAATAGATGAAAAGGTGGCTGATCGATAGTATGACCTTATTGGCACCTTTTGGTGTTTATTTTACAGTCAAGTGGGAATACTTCAATTGAAATAGGAAAGGATAGGGTGGCATATACTCATGTGCAGCGAGATAATAAGGAGACCAAAGACATACAATcaaacaggagagacagacaggcagtcagtcaCAGCAGAGAGTATTGGTATGCAGACATCACGACAGTACCTAATACAAGTTGCACTGCAACATCATCACATAGCTGCGTTACATAGCAATCTACAGCCACTAAAAAAATGTGGTTTATTATCCTGCATTAGTGGGACCATTATGAAGAATAGCAGTAAAGAGCGGTTGCACCTGTACTTGGTGTTCACCTCTCAGGGAACCAAGTCTCACATACCATGTTAGTACAGGACGAACAGAAAGTGGTATCACtcattcttttttctttttttttacacaaaggCTCCAGGACACCACAGAGGAGAAGTGGCACGATAAAACCAGTCTTGCATGAATCATTACATTAGAGGCCTATTAACCAAGGAGTCACTTTAATTCCACTAGCCAACACAACAGCCCTATTCTCTGAGCCACGCCCTGCTCCAGTGGTCACACTGCCACTGAGGACCAGGGCTCAATGCACATTCAATATATACCAATCCTTCTCATCTTCAAGTCTCTTCTACGTGCAAacctctctcttaccctctccacTACTCGATCCCCTTGGCTTGTAGGACCTTTTGGTGTTCTCAATATACATTCACTTTAAGGGAAACAAAATGGGACATTTACACGCTGCTCTGCTTCTAAAATGGTGGGCAATAGGTTATATATACTGGTGCGTCACTTAAAGGGCACTTAGAGAGACATACATGCGATGCTGCACAGTCATTGTGCCCTCCAGGTCAGGAGAGCTCAGCTTCTCATCATATCAACCATTTCAATGAAGGTTTGAGGTACACAACTGGGTGTGTTGGAATAGAAGGGGAGAAATATCGACCAATGTGTGACCGGGATCAAAGTCTCTGGATTAAATGGTTAACAACATTGTGTTGGAATGGTAGATCACAGCACATCAactttttcatttaaaaaaaaatctacatttttagtgtggtgtgtgtatcgGTCCGGAAGTCCCTCTAACAAATGTATTTTGTACAGCAgctgttgtcatggtgattgtcAGGGATGGATCCTGTAGCTCCCTGTAGCGGTTTTAAATGTAGTCCATGATGTCCAATCACATAGGATATACTGTGATGAGAGGGAGGGTAAACATAAAGGCTGGTCCAATAAGGTAGGATCCTAGTGCATCACAGTAGATCCTTGGAGTGATCAAGTGGGAGTGGAATCCTGGGAAGGCCCCAGTTAGGAGTGGTAAGACTGTGGTGTTCCTGGATTTTTGCCCAGTGGGCGAGGCTGACTTTATTATAGGAGGGTTGACTCGGGGGTCCCTCCCCTCAAGGAGTGGCCATCCCAGATTAGTGTGCAGGCCATTTTAAGTGGAGTGGTCAGTTGGGGAGATCCAAAAGGAGTGGTACAATGCGGGGTAAAAAGTTCAAGGTGCTTTCATCATGACAGAAGTGGTGAGTTGAGTGTGGAATCCAGTAGGAGTGCTACAGGAAGGGGGGTCAGATAGAGCTGGAGCCCAGTGTGGTTGTATTATGGTGTCTGTATTCAGATGAAGGTGGAGTCCATGGTGCTGCTGTCATGCGTGCTCCGGGCGCAAGCCTCAAACAGCTGTTTGATCAGAGCAGACTTCTCCTGCTCCAGCTGAGTGATGCGCTTACCCTTATCTGTCACC

Function

NR:

description
suppressor APC domain-containing protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2471739 True 2888 lncRNA 0.43 2 20008474 20011382

Neighbor

gene id symbol gene type direction distance location
LOC110509780 LOC106563302 coding downstream 57850 19946567 ~ 19950624 (-)
traf2 LOC106563303 coding downstream 102601 19882762 ~ 19905873 (-)
LOC110509775 LOC106563308 coding downstream 167790 19837235 ~ 19840684 (-)
LOC110509773 LOC106563311 coding downstream 173205 19807260 ~ 19835269 (-)
LOC110509772 LOC106563313 coding downstream 215580 19780056 ~ 19792894 (-)
LOC110509785 LOC106563298 coding upstream 11746 20023128 ~ 20025908 (-)
LOC110509787 LOC106563295 coding upstream 39413 20050795 ~ 20063783 (-)
LOC110509788 LOC106563294 coding upstream 76843 20088225 ~ 20093695 (-)
lman2la lman2l coding upstream 127574 20138956 ~ 20143762 (-)
LOC110509794 ddx54 coding upstream 750279 20761661 ~ 20772043 (-)
G2162077 NA non-coding downstream 14223 19994008 ~ 19994251 (-)
G2162074 NA non-coding downstream 15799 19992457 ~ 19992675 (-)
G2162014 NA non-coding downstream 18158 19989899 ~ 19990316 (-)
G2162013 NA non-coding downstream 18606 19989479 ~ 19989868 (-)
G2162004 NA non-coding downstream 23965 19984224 ~ 19984509 (-)
G2162091 NA non-coding upstream 4112 20015494 ~ 20015723 (-)
G2162095 NA non-coding upstream 10256 20021638 ~ 20021941 (-)
G2162097 NA non-coding upstream 11320 20022702 ~ 20023034 (-)
G2162098 NA non-coding upstream 15619 20027001 ~ 20027292 (-)
G2162100 LOC106563296 non-coding upstream 17711 20029093 ~ 20030960 (-)
G2162005 NA other downstream 23695 19984545 ~ 19984779 (-)
LOC110509757 LOC106563370 other downstream 731468 19275539 ~ 19277044 (-)
G2158111 akna other downstream 3361877 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 3400468 16607625 ~ 16608006 (-)
G2157743 NA other downstream 3585053 16421677 ~ 16423421 (-)
G2162127 NA other upstream 71763 20083145 ~ 20083618 (-)
G2162405 LOC106563289 other upstream 297807 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 318366 20329748 ~ 20330138 (-)
surf4 LOC106563281 other upstream 958950 20970332 ~ 20978032 (-)

Expression


Co-expression Network