G2162100 (LOC106563296)


Basic Information

Item Value
gene id G2162100
gene name LOC106563296
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20029093 ~ 20030960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2471752
GTCTGTGTCCAAAGGCAGCTGTTGCTCCGGTCTGTTGTGATTATGTGTCTTCTCCTGGACAGACAGCTCTATGTTGATTCCTGTCACACAGGCTtgatgttgctgctgctgctggtggtggtggtgggacagGGGACTCACAGTCCAGTCCAGACTGGCCGCTCCACTGGAGTCCAGCTCATCGGCCGAGCTGTTGTCAGTCATGGGGTAGGGAATGTCAGGGGAGGGGTTGGTTATGTCCCACTGCACCGTGGCAAAGGACAGAGGGACACTGGGATGGATCATGGGGTACACAGGTAAAGTCATGGAATCCCAGTGCTCCTCTGGCTCCTCAGTCCTTCCAGTCTGATGAGAgttatcctcttcctccctgtccaTCTGGTTTACttgctcctccatctctctccacccaaTAGCCTCCTCCAGTGGCCTGCTCTGTAGTGGGAGATCCATATTGGGCCATGTCTGGCTGTCTTGCTCCTCTCTCTCTTTTGGCGTGGCACAGCGGATGTGCTTTGCAATGACTTTTGCTGAAACATTACAGAGGCGCATTTACTTCCTGACCACAGAAGAGCAGcctttacagaaagagagagagagagagagagagaagttggaGAGCATagatggagagaaatagagagtgagAGCCAGATGGTGGGGGTGTGAGCGTTTTCACTGTATCCTAAATATTCATGTCTACTGCTAACCATCAACTTGAGCTACCATGATGTACATGTATAGGTCATGGTCCATGGACCGACCCAGAGGATATCAGTGAAGATTTTACAGTAGTATGTTGTTGAACCATATCAAGGACACTACCTAATATAAACACAGCATTTTTGTAACAATTCATGTGAAGCCTCATACTAAGCCTCCAGTCGTCATAAAAAGAAGAGTGACTTGGAAAATGGGTTCAAATACCTCCTATTCCGTCTATTTAAACTTTcactccatttctctctttcaGTCGCTCAGCCTTTTTGTCAATAGTCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2471752 True 1000 lncRNA 0.48 2 20029093 20030960

Neighbor

gene id symbol gene type direction distance location
LOC110509785 LOC106563298 coding downstream 3185 20023128 ~ 20025908 (-)
LOC110509780 LOC106563302 coding downstream 78469 19946567 ~ 19950624 (-)
traf2 LOC106563303 coding downstream 123220 19882762 ~ 19905873 (-)
LOC110509775 LOC106563308 coding downstream 188409 19837235 ~ 19840684 (-)
LOC110509773 LOC106563311 coding downstream 193824 19807260 ~ 19835269 (-)
LOC110509787 LOC106563295 coding upstream 19835 20050795 ~ 20063783 (-)
LOC110509788 LOC106563294 coding upstream 57265 20088225 ~ 20093695 (-)
lman2la lman2l coding upstream 107996 20138956 ~ 20143762 (-)
LOC110509794 ddx54 coding upstream 730701 20761661 ~ 20772043 (-)
LOC110509795 LOC106563284 coding upstream 780776 20811736 ~ 20869832 (-)
G2162098 NA non-coding downstream 1801 20027001 ~ 20027292 (-)
G2162097 NA non-coding downstream 6059 20022702 ~ 20023034 (-)
G2162095 NA non-coding downstream 7152 20021638 ~ 20021941 (-)
G2162091 NA non-coding downstream 13370 20015494 ~ 20015723 (-)
G2162087 NA non-coding downstream 17711 20008474 ~ 20011382 (-)
G2162126 NA non-coding upstream 51802 20082762 ~ 20083004 (-)
G2162136 NA non-coding upstream 68585 20099545 ~ 20099749 (-)
G2162137 NA non-coding upstream 69183 20100143 ~ 20100359 (-)
G2162150 NA non-coding upstream 77074 20108034 ~ 20108286 (-)
G2162160 NA non-coding upstream 85334 20116294 ~ 20117019 (-)
G2162005 NA other downstream 44314 19984545 ~ 19984779 (-)
LOC110509757 LOC106563370 other downstream 752087 19275539 ~ 19277044 (-)
G2158111 akna other downstream 3382496 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 3421087 16607625 ~ 16608006 (-)
G2157743 NA other downstream 3605672 16421677 ~ 16423421 (-)
G2162127 NA other upstream 52185 20083145 ~ 20083618 (-)
G2162405 LOC106563289 other upstream 278229 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 298788 20329748 ~ 20330138 (-)
surf4 LOC106563281 other upstream 939372 20970332 ~ 20978032 (-)

Expression


Co-expression Network