G2164591


Basic Information

Item Value
gene id G2164591
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21874622 ~ 21875047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2474383
GTTTATAAgagcaatgtaaaaaataatttacaTGAACATTAAATATAACTTAAAAAAGTATAACACTCTCAATAAATAGTTCTACTATTTACACCATTGCTAAGAGACGCAAAAATCACTAAATACCAACATATAGAAGCAGCAAACATTACAGGCATGAGGTACAGCGAAGGTATGCTGTGGTGGCTTACAGTAGAGAGGTGATGTTCTCGTATACAAAACATCACATCTGAAACTTCATTTCATAACATCCTGGCTTTATGGCTTTGGAACAGTACCTTGCCCAGTACAGAGAACACATCAGAAGACTAAAGCCAGACCACACATCATGGGCTGTGTACATGTTGACACAGAAGCAGTCACATTCTGTAAAGACTGTCATATCCCTTTCTCGGAGAGTCACTGTTTCTGGTCTCCGGACTGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2474383 True 426 lncRNA 0.38 1 21874622 21875047

Neighbor

gene id symbol gene type direction distance location
LOC118945362 NA coding downstream 349109 21519877 ~ 21525513 (-)
rabepk rabepk coding downstream 728128 21138218 ~ 21146494 (-)
LOC110509343 NA coding downstream 746658 21124159 ~ 21132785 (-)
golga2 golga2 coding downstream 752613 21096285 ~ 21122009 (-)
ciz1a ciz1 coding downstream 876525 20985126 ~ 20998097 (-)
LOC110509815 LOC106563268 coding upstream 4580 21879566 ~ 22337506 (-)
LOC110509818 LOC104924185 coding upstream 718554 22593601 ~ 22594656 (-)
LOC110509819 LOC106563266 coding upstream 962007 22837054 ~ 22957768 (-)
LOC110509820 LOC106563265 coding upstream 1251563 23126610 ~ 23169638 (-)
LOC110509821 kad coding upstream 1306308 23181355 ~ 23191969 (-)
G2164584 NA non-coding downstream 13681 21860718 ~ 21860941 (-)
G2164579 NA non-coding downstream 24040 21850264 ~ 21850582 (-)
G2164555 LOC106563270 non-coding downstream 91922 21782445 ~ 21782700 (-)
G2164542 NA non-coding downstream 104328 21770084 ~ 21770294 (-)
G2164540 LOC106563270 non-coding downstream 105647 21768682 ~ 21768975 (-)
G2164592 NA non-coding upstream 2295 21877342 ~ 21877570 (-)
G2164609 NA non-coding upstream 26451 21901498 ~ 21952538 (-)
G2164930 NA non-coding upstream 470016 22345063 ~ 22349932 (-)
G2164987 NA non-coding upstream 538924 22413971 ~ 22414210 (-)
G2163923 NA other downstream 261661 21612563 ~ 21612961 (-)
G2163913 NA other downstream 277127 21596551 ~ 21597495 (-)
surf4 LOC106563281 other downstream 897674 20970332 ~ 20978032 (-)
G2162422 LOC106563345 other downstream 1544484 20329748 ~ 20330138 (-)
LOC110509827 LOC106563259 other upstream 1666095 23540883 ~ 23552798 (-)
LOC110509849 enp2 other upstream 2408503 24231769 ~ 24286433 (-)
LOC110509347 LOC106565457 other upstream 2525802 24400755 ~ 24407113 (-)
LOC110509858 LOC106563233 other upstream 2655143 24530156 ~ 24537449 (-)
G2167965 LOC106563228 other upstream 2972106 24847153 ~ 24869810 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G256020 NA unknown CI01000059 null 9778555 ~ 9781777 (+)
mexican tetra (Astyanax mexicanus) G43951 NA non-coding NC_035901.1 CM008304.1 19694911 ~ 19696299 (-)