G2165628 (LOC106563266)


Basic Information

Item Value
gene id G2165628
gene name LOC106563266
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 22837071 ~ 22841481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2475443
CTTTTAATGAGAAATTGATTATTATATGAAACATTCATTTGAAATAAGCTGATATAATGATTTCAACATAACAGCAAAAATTACATAGGCAAGGTATTAGGAGTTGtatattcaatcaaatgtatCCATGGGTATTTGCGACATTGCAGGGATGTTATGCTGATAAAGCAAATGTGTGCTTGTTTCATTAATGCCATGGTCAAAACGAACTCATATTTCATATGgtacacactactgttcaaaagtttggggtcatttaaaaaagccctttaaaaaaaagaaaaacacatttatgtccattaaaataacttaAAATTGATAAGAAATACACCATATACATTGTTAAtgatgtaaatgactattgtagctggaaagagctgatttttaatggaatatctacataggcgtacagaggcctattatcagcaaccataactcctgtgttccaatggcacgttgtgttagctaatacaagtttataattttaaaagactaattgatcattataaaacccttttgcaattatgttagcacagctgaaaactgttgttctgattaaagaagcaataaaactggccttcttcagattagttgagtatctggagcatcaggaTTTGACGGTTCGATTactggctcaaaatggccagaaacaaagaactttcttctgaaactcatcagtctattcttgttctgagaaattaaggctattccatgcgagaaactgccaagaaactgaagttctcgtacaacgctgtgtactactccctttacagaacagcgcaaactggctgtAAACAGTATAGAAAGAGGACAAGTactttagagtgtctagtttgagaaacagatgcctcataagtcctcaactggcagcttcattaactagtacctgcaaaacaccagtctcaacatcaacagtgaagaggcgactccgagatgctggccttctaggcagagttcctccatcttaatcttttcttttcattggccagtctgagatatggctttttctttgcaactctgcctagaagataTTCCATTGAAAACCAGTCGTTTCCAAcaacaattgtcatttacaacattaacaatgtctacactgtatttctgatccatttgatgttattttaatggacaaaaaaaaggttttctttcaaaaacaaggacatttctaagtgaccccaaacttttgaatggtagtgtacttTGATTAAAAACGTCAGAAATTGCCACCCCTCTCTGATATTCATAATGAAGTAATTCACTTAAGAATGGAGTGTATTTGAAATTTGTTCAATAGCACACCAACGGTATTGTGGGTATTCTCATTAATAATGGCCTCTTTTGTTCTCTTGGAATTACTATGATTTAAGTAGTCTTTGATGTTATAACTATACCAACACTAAGTTGCTATTTACAGGTATAATGTACATAGGAGAGATAGTGTCAGGAAATTGAGACTTCAATCTCTTGATGATGGGTCATTTAACCACATGCACAAACCAGCAGGGCTTTAGCTAGAAAACATGTATCTCAGGCTGAGAAATGAGGGACATATCTGCATTGATGTGGTCTGATTTGCTGAATTCTTTTGAATGTCTTTATCTTGTGTGGTAATGTGTTTTTACTGTATACAGTAACTAAACTAAGAGCAATTTCCCTCCTCTAAATATGTTAAAGGGATAGGTAACAGGCActtaataatactactactactaataataataacaataataacgtAGGTAGTGTTCCTTGACAGTTCTGAGATAGTATGATGTTTGATACTATGTTTAGTTTATGTAGCTATATATAGCTATAAACGAACGTCATGTCAGTGCTTTCAATAAAGTATGACTAGAAAGATTAAACAACCTTTTGTCAGAGGGTTCAATCTGATTTGCATGGTCATTCAAAGTTAAGATCCAACTTGGCATAAAAAAAAGTACATAAAATAGAAAGTAGATTTACAGATTAAAATGAACAGAAGTATTTGAAGCTTTTATATAACTGTTTCCCATGTGGGTTCACTCTAGTTAGTAGAAATAGAAAGCCAATGGCTTTACAATGTCATCCCATAATCCCAGAGAATACACTCTCTCTGTCCACTGTGTTATCCTCCAATTGAAATGAATTTGGGGGAAACGACAACATAAAATACATGAATGGGACATTTTTCATGTTTTAGAAAAATGGACCACGGGACTTTCCATGTCTTATGTGTACCTCAGGGAAATGTATGGCTTTCATGGTGTCTGTTGCAGATGTACGCGAATGATCGATGCTCAAATTTGCTCTTGGTGCCGAAAAGCTTGACACATCAGCAGTCACAAGGTGTACGTTTTGCAAAGCTGTACGAAATAGCATTGATTGTTCATCTTCAGACCACGATTATGCACTCAGGCACCAGAAGAAACCTCATGAGAAATGCCTGTAGAATTTCAAGCACGGGAGGTAGTGCCCAAAGATAAGTTTCAGCTTAGACTGGATTCACTCACTCTcaaatgacacattcaattaacgAACAGCAATAAGCATCAAGCTAAATAAAGGTATACACATATATAAACAGCTGGTTTCTGTTATTTGACATGAAATGCGCTGCCCCGGTCGTGTGCCTATGCTTTAAGTACAGCAACAAAGTGCCTTAAACCTTACTTCACAAAGAGAGGGATGCAGACTTGTCATGAGTATTTAATGTTATAAAGAGACTATATAGCTAATGCTTAGAGTATTTGCTTGCTGGGCTATTTACCCATAAAATGTATGAATGCCTtcatactgtattaaactgtcATTTTAcatgtttgtaatattttgctTCTTGATAAAGCATATTAACTGAAATAAAAGGATGATATCTGGTCTGCCCTTATGCAACTTCATTATatctttaaaaatgttttactcagTAAATAATGGCAGTTTCAGATATAACCTTTGTTCCCTCAGACTAAAATAAAGGCCTCTTTGTCACCAGGAGATGGATTTcattgtttttcttattttttctctTTATGCTCTTTCAGGAAATGACAGACATGCTGGGACAAAATATGGTACAGTCTTTAAAGTGGTTTTCATTAATCTTCTTCTTTATCCAACTAAAAGGCTTCATCACTGCCTTTTTGAGTTTCATTTTAACAATTACAATTACAAAGTTTTAATAATACATCAAAAGGCAGAACAAAAAGGTCCaaaaaggaaaaaaataaaaaggaatatccccaaacagttatatttgtaGTGTCTGTTTGCTCTTTTTTTGTTTGATTGTTTACTGTATCTCAGCAGAGTTTGGTAGTTAGGTGATCTGATTGTTTCAGTATCTCTGTGTTGTACATGTCCAAGGCGTGGTTGACCCGGATCATCTCGCTGTTGTTCAGCTTGAGCCTGTGTTTCAGCATACAGGAAAACAGGTCCAGCTGGGGTTTCCCGGGTGCCACTGGAGGGGCCAGGCGGTTAATCCGCTCCCTAATGTCCAGCAACAAGAGCAtgacggaggaggaggagtaaaACTGGGTCCCCTGGGTGTACGACTGGTTCACCTGCTGCACGGCGCTGCGGAGCAGGTCAGCGTTGAAGCGCAGGCTGTAACCAAACACCTGGATGTCGGAGATCTTGATGTAGATCTGGCGCTTGTTGGGGTCGGACAGGTCCACGGGACCCTGGCCCGTGTCATTTCGTAACCCAGTGGGCACCTTGGCGCGGCTTCGTAGGTAGATGTGCACCGTCTCAAAGAAGGTCTTCCACCGGTTGCCCAGCAGCAGGGTCCAATTGAAGCACTGGGAGTTCCCCAGCCTCGTCTTCTCCCAGCGCGGGTAGCCGTGCTCGCCGAAGGGCATGCTCCAGCCCTCTGAGTGGCTGCCGCTGAACGGGTTCACGTAAACAAAGAACATGGGGTCAATGCTGCTGTTGCGCATCTGGCAGATCTTCATGGAGAGCCCAATGATCATGTGGAGGTAGTCCATCCGGTTCTTGTTGCTCTTCAGTGTCAGGGACATGCGCTTGCGCCACCGTGGGTCAAAGAAGGTCTCCAGGCGGATCTCGTTGCTTATGAAGGTGGTGTGGATGTAGAGGCGCGAGTCCATCTTCTGGAGCAAGTACTTGAGCTCCAGGTCTTGGAAGTCCAGGTCGGTCTCGAAGCTGATGAACTGCTCGCTGCGTTCTGAGTCCACGTTCTGGGGCTCACAGCGGCCTCGGTACAGCTGTTGTTGCCCCCAATGATACATGGGATGGGTCGCTGGCATAGGGTGATACCCGTGTGGCACACGCACATCCTCTGGCTCTCCAGGAAGGTCCCCCAGAAACTGTTCTCATTGCAGTAGAGGAAGGACTGGACCCTGTTCAGCCACTGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2475443 True 4350 TUCP 0.40 2 22837071 22841481

Neighbor

gene id symbol gene type direction distance location
trim32 LOC106563269 coding upstream 846830 21985765 ~ 21990241 (+)
LOC118945260 NA coding upstream 862091 21963673 ~ 21974980 (+)
pappaa LOC106563270 coding upstream 962000 21749280 ~ 21875071 (+)
LOC110509813 LOC106563271 coding upstream 1128114 21670528 ~ 21708957 (+)
LOC110509811 LOC106563272 coding upstream 1447409 21160126 ~ 21389662 (+)
LOC110509823 LOC106563263 coding downstream 470155 23311636 ~ 23325364 (+)
LOC118945326 NA coding downstream 538424 23379905 ~ 23382422 (+)
LOC110509824 LOC106563262 coding downstream 564522 23406003 ~ 23408940 (+)
LOC110509825 LOC106563261 coding downstream 570061 23399671 ~ 23465618 (+)
LOC110509345 LOC106563260 coding downstream 626919 23468400 ~ 23534217 (+)
G2165617 NA non-coding upstream 8049 22828800 ~ 22829022 (+)
G2165587 NA non-coding upstream 25285 22811577 ~ 22811786 (+)
G2165575 NA non-coding upstream 30790 22805944 ~ 22806281 (+)
G2165560 NA non-coding upstream 42600 22794201 ~ 22794471 (+)
G2165554 NA non-coding upstream 48588 22788276 ~ 22788483 (+)
G2165972 NA non-coding downstream 281714 23123195 ~ 23125608 (+)
G2166008 NA non-coding downstream 318591 23160072 ~ 23181710 (+)
G2166007 NA non-coding downstream 340502 23181983 ~ 23191941 (+)
G2166020 NA non-coding downstream 351554 23193035 ~ 23196885 (+)
G2166066 NA non-coding downstream 418687 23260168 ~ 23261360 (+)
G2163804 LOC106613263 other upstream 1236019 21600418 ~ 21601052 (+)
G2161678 NA other upstream 3039297 19795260 ~ 19797774 (+)
G2161635 LOC106563312 other upstream 3084328 19741814 ~ 19752743 (+)
LOC110509766 LOC106566689 other upstream 3220560 19609602 ~ 19616511 (+)
G2165973 LOC106563265 other downstream 284299 23125780 ~ 23134290 (+)
LOC110509837 LOC106563250 other downstream 944138 23785060 ~ 23793640 (+)
LOC110509859 LOC106563234 other downstream 1658927 24500361 ~ 24532163 (+)
LOC110509866 LOC106563223 other downstream 2358138 24944825 ~ 25202836 (+)

Expression


Co-expression Network