G2166141


Basic Information

Item Value
gene id G2166141
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23123142 ~ 23125605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2475987
gaaaaagggaaggtgtcggaatactttccaaatgcactgtacatcataTTGTTTTGCTCCAAGCCATCTGTTACATACAAGCAGAATTTATAACTAAATGTCCATGCATGTCAATGTTACTTAGGAGCCTTTGCGAATGAATAGTTTTTAtagtccatttaaaaaatatataatatttatcTGAAATTGTATTATGTCTAGCTAGATAGAGACACATTTTACTTTCCTCAATGCAAACTAAAGTCAACCCCAAAGCAAGTTTTTACCAAAAACATTGTGAGATTTGTAAagaccaacaacaaaaaatatgaaaaatgaaGATTTAACATCTAAATGATTGAACTCAGGAAAAACTATATTTGGCATTATCGTAATTTCGGGACAAATGATTGATGTTCAGTGCCAAGAAAAATGGAAATCAGATGTGATAGATGGTTGAACCGTAAATGTAAACCCATTCTGGGTGTAATTGtacaaatgtaaatgtattattattgtattgCCTCTTTTTACCTCTTTGAAAATGCTCTCACAATACAAAGAAAAGCTTTGTGATGATGACCTGCTGGGTATAAAGACATTCCCTTCAAACATTCCATTCAGCCATGTCTCTGAAAGAAACAGCAATACTGTACCAAAAGTATACAGTTTGTATAATAATTTGTATGTTTTTATTGTTATGATCGTACTAGTTATTGTTCATTACACAAACTTATATTTGTTGAGTAATTAATTATTAATGAGTCATTCATTTGTTTTGATACTGTCACCAAAAGCAGCCATCTTAAAACCAAGTGAGCTTCCTCAACCAAACACTGTTTTGAATGGACCAATATGTTTTTTCCCCTACCTAAATAATTATGTAGCTAACTAAtaatgcattgtgtgtgtgtttttatgtgcatgtgtgagtgagtgagtgcgtgcgtgcatgctCTAACTTATTCCGTTcaaatatatacattatatagatatatattaagTCAAATAGCTTACTACACACCCCAAAACTTTTCAAATGTTCAAATCAAGAGGCTATTGCGCAGAAAAATGTGGACAGTCGGGCGCATTGCAAATTCAGAACCTCTGGACAGCAACATAATAAACTGAAGCACTGATCATTGGGAGCGAGATCAGAAATAGGTAGCCTCGCCTACAAAACTAAAACACCCCATATGTTCAAATGAAAAGTCCTGATTTAACATGACATTAATAACACAGCCACATCCTGAGTACCCGGTGCCGACACGTTCAGAAATCAAAAGATGGTTTGTGcaatagaccgctgcgccactcgggaggccccattgAAGCTATTATGAGCCAAAACTTTTAACCCACAATAGTCAGCATATAAGGGGAGCACTGGCGTCTCACTGTACTGAACCTCCACAGGCAAGCAACTGTGAATGAAGGGAGTGTTGTAGTATCAGACAGTCTGTGACAGCTAGACTCTCTGAGAGTACTGACAGAAAGCAGGGTAAATCAGATGGGCTGTCAGTTAATCCGGTTGTTAACCCAGCAGATTCTGGCTCATAGATACACATGAGCCAAGCAATCCTCAACACACGGCACTTGTCCCTTTCTCACAATGCTAGACACTCGCAAGGCGAGGCGagcagactgtgtgtatgtgtgtgttgaagACAGAATATGTGCATGTATtacgagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagaaagtgagtgttTGTCTTTCTGGAGGTGTCTTTGTTTAAATCCAGAAAGGAGAGGGACTTAGGAAGTGGTTATGAGCTTTTTGTTCTTGAGTGATACACTCAACGCAGCTCTTGAGTTGGGAGGCTCCCAAACGTACAAGGTCTAAGTGTAGAAGAAAAATATCATCCAATATTTCTTGCATCATATGCAATTGAAATCACATAAAAAAGGGGATTACTTTTTTGTTTTATCACATTTCTTTGTAACTAATATAACATGTAAAAACTGAATACATTGAAACTCATCTGGACAGACAGGAATAATAACATTACCAAGTATCTTAACCCTTGAAATATATTCACAGGAATACATTTTTCTGTTATCTATTTTTTTCCTATAAGCAGCAACATGAAGTCATTTCCCTCATTTTGATCTGTACTGGGCTGCTGAGTTAGAAATAATGCCTTAGATTAAAGGCTTGTTTGTGCCTGGGTATAGTGTGTCTATACAGGATGTCACCCTTCAGGATTGTTAACAACGTTGTTAGTCTGTCATCTTAACAAAATGACTGCTCCAATTCTATGCATGGATGAAAAATGCAGGGAATTCCATAACCCTGGCTAAAGTGCCTTTTATGGTGCACTGAACAAATACAAATGATATGGTATGTTGTCTTTTGAAaagtatatatgttttttttgtgtatcAACCG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2475987 True 2437 lncRNA 0.37 2 23123142 23125605

Neighbor

gene id symbol gene type direction distance location
LOC110509819 LOC106563266 coding downstream 165374 22837054 ~ 22957768 (-)
LOC110509818 LOC104924185 coding downstream 528486 22593601 ~ 22594656 (-)
LOC110509815 LOC106563268 coding downstream 785636 21879566 ~ 22337506 (-)
LOC118945362 NA coding downstream 1597629 21519877 ~ 21525513 (-)
rabepk rabepk coding downstream 1976648 21138218 ~ 21146494 (-)
LOC110509820 LOC106563265 coding upstream 1005 23126610 ~ 23169638 (-)
LOC110509821 kad coding upstream 55750 23181355 ~ 23191969 (-)
LOC110509822 LOC106563264 coding upstream 67397 23193002 ~ 23260394 (-)
LOC110509827 LOC106563259 coding upstream 415278 23540883 ~ 23552798 (-)
LOC110509832 LOC106563254 coding upstream 544174 23669779 ~ 23699884 (-)
G2166138 NA non-coding downstream 79085 23043842 ~ 23044057 (-)
G2165927 NA non-coding downstream 88333 23034586 ~ 23034809 (-)
G2165584 NA non-coding downstream 313210 22809644 ~ 22809932 (-)
G2165548 NA non-coding downstream 337617 22785271 ~ 22785525 (-)
G2165416 NA non-coding downstream 514702 22608004 ~ 22608440 (-)
G2166329 NA non-coding upstream 236878 23362483 ~ 23362996 (-)
G2166599 NA non-coding upstream 241254 23366859 ~ 23367138 (-)
G2166601 NA non-coding upstream 243490 23369095 ~ 23369404 (-)
G2166619 NA non-coding upstream 274571 23400176 ~ 23465613 (-)
G2166682 NA non-coding upstream 362534 23488139 ~ 23488508 (-)
G2163923 NA other downstream 1510181 21612563 ~ 21612961 (-)
G2163913 NA other downstream 1525647 21596551 ~ 21597495 (-)
surf4 LOC106563281 other downstream 2146194 20970332 ~ 20978032 (-)
G2162422 LOC106563345 other downstream 2793004 20329748 ~ 20330138 (-)
LOC110509849 enp2 other upstream 1157945 24231769 ~ 24286433 (-)
LOC110509347 LOC106565457 other upstream 1275244 24400755 ~ 24407113 (-)
LOC110509858 LOC106563233 other upstream 1404585 24530156 ~ 24537449 (-)
G2167965 LOC106563228 other upstream 1721548 24847153 ~ 24869810 (-)

Expression


Co-expression Network