G2165972


Basic Information

Item Value
gene id G2165972
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23123195 ~ 23125608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2475796
CATTTGTATTTGTTCAGTGCACCATAAAAGGCACTTTAGCCAGGGTTATGGAATTCCCTGCATTTTTCATCCATGCATAGAATTGGAGCAGTCATTTTGTTAAGATGACAGACTAACAACGTTGTTAACAATCCTGAAGGGTGACATCCTGTATAGACACACTATACCCAGGCACAAACAAGCCTTTAATCTAAGGCATTATTTCTAACTCAGCAGCCCAGTACAGATCAAAATGAGGGAAATGACTTCATGTTGCTGCTTATAGGAAAAAAATAGATAACAGAAAAATGTATTCCTGTGAATATATTTCAAGGGTTAAGATACTTGGTAATGTTATTATTCCTGTCTGTCCAGATGAGTTTCAATGTATTCAGTTTTTACATGTTATATTAGTTACAAAGAAATGTGATAAAACAAAAAAGTAATCCCCTTTTTTATGTGATTTCAATTGCATATGATGCAAGAAATATTGGATGATATTTTTCTTCTACACTTAGACCTTGTACGTTTGGGAGCCTCCCAACTCAAGAGCTGCGTTGAGTGTATCACTCAAGAACAAAAAGCTCATAACCACTTCCTAAGTCCCTCTCCTTTCTGGATTTAAACAAAGACACCTCCAGAAAGACAaacactcactttctctcacacacacacacacacacacacacacacactctctcgtaATACATGCACATATTCTGTcttcaacacacacatacacacagtctgctCGCCTCGCCTTGCGAGTGTCTAGCATTGTGAGAAAGGGACAAGTGCCGTGTGTTGAGGATTGCTTGGCTCATGTGTATCTATGAGCCAGAATCTGCTGGGTTAACAACCGGATTAACTGACAGCCCATCTGATTTACCCTGCTTTCTGTCAGTACTCTCAGAGAGTCTAGCTGTCACAGACTGTCTGATACTACAACACTCCCTTCATTCACAGTTGCTTGCCTGTGGAGGTTCAGTACAGTGAGACGCCAGTGCTCCCCTTATATGCTGACTATTGTGGGTTAAAAGTTTTGGCTCATAATAGCTTcaatggggcctcccgagtggcgcagcggtctattgCACAAACCATCTTTTGATTTCTGAACGTGTCGGCACCGGGTACTCAGGATGTGGCTGTGTTATTAATGTCATGTTAAATCAGGACTTTTCATTTGAACATATGGGGTGTTTTAGTTTTGTAGGCGAGGCTACCTATTTCTGATCTCGCTCCCAATGATCAGTGCTTCAGTTTATTATGTTGCTGTCCAGAGGTTCTGAATTTGCAATGCGCCCGACTGTCCACATTTTTCTGCGCAATAGCCTCTTGATTTGAACATTTGAAAAGTTTTGGGGTGTGTAGTAAGCTATTTGActtaatatatatctatataatgtatatatttgAACGGAATAAGTTAGagcatgcacgcacgcactcactcactcacacatgcacataaaaacacacacacaatgcattaTTAGTTAGCTACATAATTATTTAGGTAGGGGAAAAAACATATTGGTCCATTCAAAACAGTGTTTGGTTGAGGAAGCTCACTTGGTTTTAAGATGGCTGCTTTTGGTGACAGTATCAAAACAAATGAATGACTCATTAATAATTAATTACTCAACAAATATAAGTTTGTGTAATGAACAATAACTAGTACGATCATAACAATAAAAACATACAAATTATTATACAAACTGTATACTTTTGGTACAGTATTGCTGTTTCTTTCAGAGACATGGCTGAATGGAATGTTTGAAGGGAATGTCTTTATACCCAGCAGGTCATCATCACAAAGCTTTTCTTTGTATTGTGAGAGCATTTTCAAAGAGGTAAAAAGAGGcaatacaataataatacatttacatttgtaCAATTACACCCAGAATGGGTTTACATTTACGGTTCAACCATCTATCACATCTGATTTCCATTTTTCTTGGCACTGAACATCAATCATTTGTCCCGAAATTACGATAATGCCAAATATAGTTTTTCCTGAGTTCAATCATTTAGATGTTAAATCttcatttttcatattttttgttgttggtctTTACAAATCTCACAATGTTTTTGGTAAAAACTTGCTTTGGGGTTGACTTTAGTTTGCATTGAGGAAAGTAAAATGTGTCTCTATCTAGCTAGACATAATACAATTTCAgataaatattatatattttttaaatggactaTAAAAACTATTCATTCGCAAAGGCTCCTAAGTAACATTGACATGCATGGACATTTAGTTATAAATTCTGCTTGTATGTAACAGATGGCTTGGAGCAAAACAAtatgatgtacagtgcatttggaaagtattccgacaccttccctttttctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2475796 True 2351 lncRNA 0.37 3 23123195 23125608

Neighbor

gene id symbol gene type direction distance location
trim32 LOC106563269 coding upstream 1132954 21985765 ~ 21990241 (+)
LOC118945260 NA coding upstream 1148215 21963673 ~ 21974980 (+)
pappaa LOC106563270 coding upstream 1248124 21749280 ~ 21875071 (+)
LOC110509813 LOC106563271 coding upstream 1414238 21670528 ~ 21708957 (+)
LOC110509811 LOC106563272 coding upstream 1733533 21160126 ~ 21389662 (+)
LOC110509823 LOC106563263 coding downstream 186028 23311636 ~ 23325364 (+)
LOC118945326 NA coding downstream 254297 23379905 ~ 23382422 (+)
LOC110509824 LOC106563262 coding downstream 280395 23406003 ~ 23408940 (+)
LOC110509825 LOC106563261 coding downstream 285934 23399671 ~ 23465618 (+)
LOC110509345 LOC106563260 coding downstream 342792 23468400 ~ 23534217 (+)
G2165617 NA non-coding upstream 294173 22828800 ~ 22829022 (+)
G2165587 NA non-coding upstream 311409 22811577 ~ 22811786 (+)
G2165575 NA non-coding upstream 316914 22805944 ~ 22806281 (+)
G2165560 NA non-coding upstream 328724 22794201 ~ 22794471 (+)
G2165554 NA non-coding upstream 334712 22788276 ~ 22788483 (+)
G2166008 NA non-coding downstream 34464 23160072 ~ 23181710 (+)
G2166007 NA non-coding downstream 56375 23181983 ~ 23191941 (+)
G2166020 NA non-coding downstream 67427 23193035 ~ 23196885 (+)
G2166066 NA non-coding downstream 134560 23260168 ~ 23261360 (+)
G2166030 NA non-coding downstream 142272 23267880 ~ 23361214 (+)
G2165628 LOC106563266 other upstream 281714 22837071 ~ 22841481 (+)
G2163804 LOC106613263 other upstream 1522143 21600418 ~ 21601052 (+)
G2161678 NA other upstream 3325421 19795260 ~ 19797774 (+)
G2161635 LOC106563312 other upstream 3370452 19741814 ~ 19752743 (+)
G2165973 LOC106563265 other downstream 172 23125780 ~ 23134290 (+)
LOC110509837 LOC106563250 other downstream 660011 23785060 ~ 23793640 (+)
LOC110509859 LOC106563234 other downstream 1374800 24500361 ~ 24532163 (+)
LOC110509866 LOC106563223 other downstream 2074011 24944825 ~ 25202836 (+)

Expression


Co-expression Network