G2167599


Basic Information

Item Value
gene id G2167599
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 24492720 ~ 24495057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2477595
GGAAAATATCATCCAATGAACTCTTGTTTACAGATCAGGGTCATGGAAAAGTCCTGATGACCCAATGAAATACGATAGAGACACGAAagttgtgaaACAGCACTTGATAAAGGAGGTGTGAGTGCTGTCATATTTGGGTACTATAGGGATCAGCATCTCTGGCTTTACAGCACTCTGTTAGTTGACATGAGATTGCCAAATAGGACAGAAGATTGGGTAGTCCAGGTGAGACAGAGGTAAGAAGTCAACATGAACACAAAAAAACACTTAAACACCAGATGATCCCATAAGACTTTCCAGTGTAATGAAGCAGCTGCAGTGTACATGGATGGAGAGATATTTGGGTTCTGCAAAGTGCATCTGTATCAGAGGCTaatgggaggagctataggatgataggctcgttgtaatggctggaatggaatgaaaggAACAGGGTCAAATACGTGGTTTCtatatgtttgataccgttccatttattccattacaatgagcctatcctcctatagctcctcccaccagcctccactgagttCTGTATACATAAGAGCATAGGACATATCAAATTCTAACTAGATAAACAAACAAAAGGAATAGCATATTAAATAAAAGCGTGAAAAGGTGTTTTGAAGGTTTTACGCGATCCAGCCATTGACATGAAGGCTATAAATATTGTATGCATAGAGAAGAATCCTCCTTTTGAAGTCTTTTGAGAGCTAAGAcagaggaagaaagggaggggAGACGGTAATTACTGGTGGAAATGCTCTTTGACAGATTATTCTATTAAAGTAGGAGGTTGTTCAAACAAACACAGCTAACCTCCAACAGCACTGGTCTCCACCTATCAATGACAAGAACATTCTCACCTGTAGAAACACTTCCCCTTGACAAACAAGACACTTACTGGGAGCCAATCACATGATGGGAAAACCTGTATGCTCCTTATAATGCAAGTTTGTCTATGAAAACGTTTATGCTCCGTATAACGCTACAGAGTTGGTCTAAGAAAAAGACTGGTCATTTTGAACGAGAGAATATTGAATGGTAATAATTCGCAAAGTGCTAGTTTCTAATGAATGATTCAAAACCTGAAGACGTATTTTCAGTGTGGATCGTCAAAATAGCGCCACAGAAAACAGGCAAATTATCCAAATTTACTCAACTACTAATCTCTGAACATGTCTACTGATGACAATGGGCTGAGGATTCTGGGTAAAACTCTGGCTCTCTCATCAAGTGTTGAGAGCTGCGAGCCGGGCAGCTTCCTCACGCAGGGCTAGCCCCAGGGCAGCCTATCATCTCCAGTGACACCAGAGGGAGGGTGGAACCTCACCCCTCTGCCTGGCCAGGGCTGTGCATGGGGATGTAAGGGATGAGACGACAAGATGGAGAGCAGTGCTGTTACTAGCCCAGTCTACTAGGTCCAACTCCATCTTTGATCACTGGCCACTGACCTCCATGTTTCCGAGATATGGGGAAGGAGTGGGAGGGGGGGAGCGGGGAGAGCACATCAAGTACACATCCTTCCCAAAGTAAAACAGGGTTAATTGTATTTAACAATATGCACTCTTAACCCCCCCTGATTAGAACGAGCATCACATCTGCCTGCCGCCCGGCTCTGTTCCTCATTACTGTGGAATCTCATTACAATCAGCACCCATGGGAGACACAGCTTCAGTTTTAAAcactttctatccctctcttcctacctcacactcctctctctttctctcagtctaCAATATCGGAAGTCCTCATCTAAGAGTCATTTTTTTCTCCCACATGCAGCATGGAAATTGCTTTACACTGccaattaaaataacatacatttAGATCGTTTCCCCTCAGTCAGTGAGGATATGTATGTGTTGCTCTCTAATGGCAGAAGTAGACCTAAAATAAGGCTGACAGAATAACACACACGTGTTTGGAAATGTAGTAAAAAATGAGGAAAATAAGGAGGTTAACTTATGGGTCTGTGAACTCAGAGAAAAGGTTAGATCCATCTCCACACACTCAACTTTCTCTCTTAATAAACCATATTCATATCAGTGGGGTTTCAAATGTATATtcaaaacctttattttttttaattaaaaggtTGTGGTATAATTCATTTAAACATATAAATAATGCTTGGCAATAAGTaacaagtaaaaataaagaaaattgtCCATCTAGTCCAAGCAGGCGCACAAGTGTTGCAGGCAATGTAACCCCGGCTCTCCACAAGCCTGTCCTATAGTCCTAAAGGAGGGGGGAGTCGCAGAATGTACAAGGACCCTGCAGTATCCTCTTGATCCAG

Function

NR:

description
general transcription factor 3C polypeptide 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2477595 True 2308 lncRNA 0.42 2 24492720 24495057

Neighbor

gene id symbol gene type direction distance location
LOC110509856 LOC100380649 coding upstream 60032 24410298 ~ 24432688 (+)
LOC110509844 LOC106563243 coding upstream 373838 24059336 ~ 24118882 (+)
LOC110509843 LOC106563244 coding upstream 446857 24042927 ~ 24045863 (+)
LOC110509842 LOC106563245 coding upstream 456943 23884122 ~ 24035777 (+)
LOC100301660 LOC106563362 coding upstream 639898 23851125 ~ 23852822 (+)
LOC110509859 LOC106563234 coding downstream 5304 24500361 ~ 24532163 (+)
LOC110509861 LOC106563232 coding downstream 83548 24578605 ~ 24591900 (+)
si:ch211-114l13.9 LOC106563229 coding downstream 138244 24633301 ~ 24642099 (+)
LOC110509863 NA coding downstream 252286 24747343 ~ 24751800 (+)
LOC110509348 LOC106563228 coding downstream 258488 24753545 ~ 24914892 (+)
G2167594 NA non-coding upstream 5131 24487386 ~ 24487589 (+)
G2167587 NA non-coding upstream 15721 24476778 ~ 24476999 (+)
G2167573 NA non-coding upstream 25667 24466739 ~ 24467053 (+)
G2167564 NA non-coding upstream 37687 24454758 ~ 24455033 (+)
G2167551 NA non-coding upstream 45413 24446953 ~ 24447307 (+)
G2167602 NA non-coding downstream 4671 24499728 ~ 24499957 (+)
G2167603 NA non-coding downstream 4950 24500007 ~ 24500248 (+)
G2167634 NA non-coding downstream 43625 24538682 ~ 24539117 (+)
G2167635 NA non-coding downstream 44324 24539381 ~ 24539617 (+)
G2167637 NA non-coding downstream 45551 24540608 ~ 24540835 (+)
LOC110509837 LOC106563250 other upstream 701056 23785060 ~ 23793640 (+)
LOC110509345 LOC106563260 other upstream 967389 23468400 ~ 23534217 (+)
G2165973 LOC106563265 other upstream 1358430 23125780 ~ 23134290 (+)
G2165628 LOC106563266 other upstream 1651239 22837071 ~ 22841481 (+)
G2163804 LOC106613263 other upstream 2891668 21600418 ~ 21601052 (+)
LOC110509866 LOC106563223 other downstream 704562 24944825 ~ 25202836 (+)
LOC110509876 LOC106563358 other downstream 1968244 26463263 ~ 26464615 (+)
LOC110509877 LOC106563217 other downstream 2033915 26504919 ~ 26532797 (+)
G2170458 LOC106563185 other downstream 2827048 27322105 ~ 27324765 (+)

Expression


Co-expression Network