G2170289


Basic Information

Item Value
gene id G2170289
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 26955697 ~ 26968734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2480467
GGATATAAATATACTTTTTAATATTCGTGAGCTGGCTACATCACCATTGTAAGCCACTGGAAGAGTGAAGGATTCCAAAACAGTGCTGCTATTCTGCATCCAATTAAATGTTTAGAAAAACCTTTGAACATTCCTGCACACCTTGTAGTGTATCATGTTGTTTGTGAAACACAAGTTATTGGGGGGCATTTTGCAGTCATTTGTCAGTCCTCCATGAAGGAATCAGGACAATGGGGGCTGTTTTGTGTTGAAGGCTGAATATAACAGCAGTATGTAGGCTTACTGAGACACATGCTCACAGCTAGATCTGACCAAGGTCAGGATCAAGCTCTCTTCCGTCTCCAACATCCTCTGTTCCCCAATGCTGGGAGGTGGGCCTGAGTgaaaaaaaagtttgggaacctctGTGCTCAATGACTAAAATCTTAAATGCTCCCCGCTTAGATTACTTTGTAAATCAATTGGGCAGATATGTTCTCAGTGACAGTTGACCCAAGGACAACCTTTTACAAAATGACAAAACAGTATACTCAGAACAagtcatcaccacacacacaaaattgTATTTTCTGTGATGGAAGCACTCACCTTTTTAGAAATGTGAAGCCATGACTGCACAACAGAATGTTTCCATTGGAGTCCACCTTCAGCAAGTTCCCATACATTGTGTCAAACACCAGGCCactagaaaggagggaggagtgatTGGGATGAATAAAGTTAtgcagagagaggaatggatTGGAGAGGGCaatattatatattttagatGTGTGGTTGTTGTTGATATAATCAGTAGGTTACTTTTTATTTCTCCTCTATTTTGACCGATCTTGTTATACTGTTACCAGGCCTTTGGGGAAAGTCTCTGCAGGAGGTCTGTTTGTACTAATTAAATTGTAAAATGTCAGATGTTTCTCCAGCAGTGTCACCCTGGGCCAAGGACACAGAAAATAGACTGCACAGAGCCACAAATGGTTTAAAAAAAGAATGGTTAGGGGTAATTTCATAAGTAGACTCCCATAAAGAGTCCCATCCTAACTAACCATGGTTTGCATCTACCCCATGTCTTTGTGAGTACCGGGTCACGTTATTTACTACCAAACTAAACATACATAAACATAAACAGTATGTAAATGTGTGTGAGATCAACAGAATGAGAGAACTTACCGAGTGGGGAAGGTGGGGTCGTAGTTGTAACGCAGTAGCTCATGGGGATAGCCTATAGACACCAGCCTGTCTCTGAGCAGCTCAAAGCCTAGATCCTCATAGTCAGGAGACTTatacgctacacacacacataaactgtCAGTACATTCATCAGTGGAAATGTTACAATATTTGTATGCTCATATACTTAAATCTGTGAGACACAGCTACTAGATTTCCATATTTTCGGCCTTTTTTGTTGCCCTTTACCAGTACATCTCTTTGTTGGAGTAGGTGTACTGGGCTACTAAATGAACCTACCTGCCAGCGTGTAGTCCATGTCAAAGCCATAGCATTTGATGTTCTCCAATGTTACACTTCTATTGACGAACACCTATGCTGATAGTCCCTGTTCTTCAGCATGGgTACATCAAGCGAAATGCTCGGGTCTGAAGTAGGTTGATTTCTCACAATCCGAGTCGGAACCTCCATAGTCATCGCCGTTTCAGACTCTCTAGCGGCTACCCATATCAGATGCCACTATCCCCCTCAGCATTAGCTGTCATCTCACTATTAGCCTACAAACTGGAGAGGCATTTAAAGTTGTAGAATATGCAGATGTGTTCATAAAGAGTTTCCCTACACGTC
>TU2480466
taccctttcccagatctgtgccttgacacaaccctgtctcggagctctacggacaattccttcgacctcatggcttggtttttgctctgacatgcactgtcaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtccaatcaattgaatttcccacagatggacttcaatcaagttgtagaaacatcaaggatgatcaatggaaacaggatgcacctgagctcaatttcgagtctcatagcaaagggtctgaattcttatgtaaataaggtatgtttatttttattgaatttgtaaacatttataaAATCCAGTTTTCGcgttgtcattacggggtattgtgtgtagattgctcagGAAATAGTTTTAtgtaataaattttagaataaggctgtaacgtaacaaatgtggaaaaagtcaagaggtctgaatactttctttaGGCACTAATGAAAGGCATAATGCATATTATGTTACATTAAATAACTCACTTATGCTGATAGTCCCTGTTCTTCAGCATGGgTACATCAAGCGAAATGCTCGGGTCTGAAGTAGGTTGATTTCTCACAATCCGAGTCGGAACCTCCATAGTCATCGCCGTTTCAGACTCTCTAGCGGCTACCCATATCAGATGCCACTATCCCCCTCAGCATTAGCTGTCATCTCACTATTAGCCTACAAACTGGAGAGGCATTTAAAGTTGTAGAATATGCAGATGTGTTCATAAAGAGTTTCCCTACACGTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2480467 False 1797 lncRNA 0.42 3 26955697 26968734
TU2480466 True 757 lncRNA 0.40 2 26959955 26968734

Neighbor

gene id symbol gene type direction distance location
LOC110509887 LOC106563206 coding upstream 18866 26897950 ~ 26936831 (+)
LOC110509880 LOC106563212 coding upstream 225143 26720573 ~ 26730554 (+)
LOC110509881 LOC106563214 coding upstream 235243 26699773 ~ 26720454 (+)
LOC110509879 LOC106563215 coding upstream 256560 26569347 ~ 26699137 (+)
LOC110509878 LOC106563216 coding upstream 388971 26556804 ~ 26566726 (+)
LOC110509890 LOC106563202 coding downstream 51493 27020227 ~ 27056214 (+)
LOC110509891 drg1 coding downstream 87847 27056581 ~ 27072987 (+)
LOC110509893 LOC106563198 coding downstream 144752 27113486 ~ 27132244 (+)
LOC110509895 fam136a coding downstream 176610 27145344 ~ 27147704 (+)
LOC110509897 LOC106563193 coding downstream 191766 27160500 ~ 27176934 (+)
G2170287 NA non-coding upstream 2357 26950160 ~ 26953340 (+)
G2170255 NA non-coding upstream 75529 26879882 ~ 26880168 (+)
G2170211 NA non-coding upstream 85785 26868624 ~ 26869912 (+)
G2170251 NA non-coding upstream 92261 26863156 ~ 26863436 (+)
G2170175 NA non-coding upstream 158140 26758295 ~ 26797557 (+)
G2170292 NA non-coding downstream 3574 26972308 ~ 26972569 (+)
G2170373 NA non-coding downstream 113410 27082144 ~ 27084777 (+)
G2170346 NA non-coding downstream 213356 27182090 ~ 27186900 (+)
G2170403 NA non-coding downstream 221333 27190067 ~ 27190382 (+)
G2170405 NA non-coding downstream 225922 27194656 ~ 27196006 (+)
LOC110509877 LOC106563217 other upstream 422917 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 other upstream 491136 26463263 ~ 26464615 (+)
LOC110509866 LOC106563223 other upstream 1753056 24944825 ~ 25202836 (+)
LOC110509859 LOC106563234 other upstream 2423543 24500361 ~ 24532163 (+)
LOC110509837 LOC106563250 other upstream 3164033 23785060 ~ 23793640 (+)
G2170458 LOC106563185 other downstream 353371 27322105 ~ 27324765 (+)
gigyf1b LOC105024601 other downstream 1334471 28277874 ~ 28313151 (+)
LOC110509373 LOC106563396 other downstream 1710114 28678848 ~ 28681351 (+)
G2173098 NA other downstream 2590836 29559570 ~ 29559959 (+)
G2173114 NA other downstream 2616860 29585594 ~ 29587472 (+)

Expression


Co-expression Network