G2170373


Basic Information

Item Value
gene id G2170373
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 27082144 ~ 27084777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2480561
ATTGAATCATATTAGTTGCTCCATTTCAACATGGAATCATACAATGACAACTAAATTCTTGCCAGGTTCCATATATTTTCCCAATTCTTTTCAATCAATATATTTTACACAATTTCTAAAGGAATTAACTTCTGGAAATGATATCCAAGGTGTTAAACTGcattttgaaaaaaaatatataaacagtaTATTGAACACACAATTGTAGTCTAGAAAGGGATAGCACACCAAAGCGTTACAATCGCCAGATTTACATTCTCAAACATTGCATACAGTAGTTCAATATAGAAGTTTTATGCTCTGCATACACATAGCTCTGACCATCACTAAACAAAAGCTCAACTAATTCATTTCCTCTCACATGTACAATATATCAAAACACACCATATGCTGACAATCATACTGTGGACAGTAAAACAATTTCTTCACCACAAAGATAAGAGTAGGTAAACGATCTTTTGTTATTTCAGACTTCATGGGAGTAAGTTATCTTAAAGGCCCAGTGGAGTCAAGTGTGTTTTATAGCATACAGTACAGCAGCTGATGAAACTagcaaatgtaaaaatgtaaaattaaatgtaaaaacacgagttatttcctgatagttgctggttgaaaatacaatctacacagggcCTTCTAATCAGGTTTGCGCGAGTGTCAGCTTTCCTTAGTGAgatcaccatgcggtaaattgGTTAGGAACTCTTGTTATGCATGTGTCTGCCAATAGCAGCTAGACCACTCCCAGATAGTCCCAGCTAAATTCTGAGGttttttttgcccattttaaaaTAATCTATTATAGTAAGGTAcagttgttacccagaaatgatttgatattacaAAAGTGCCCCTTGGCATTTGAATGCATTTGAATGTATTGAACTATGGTATCTTTTCAATGCAACTTCAATTAATTTTTACATTCCTATCTCAGTATTTGTGACCTACCAACAATCCGTTTTCATGGAACTGTAGTCATGCATATATACTGGTACCATAAATGAATGAATCTTTGCCTGGAAAATTCTCTGTTATACCAATATCAGTAACAGGGGAAAAAAATGACATACAGAAAAAGGTGCTCCTTCAATTGTACCAGATTGTCAGGCTGAGCAGAGAATTCACACATGCCCCTTACTCCAGTGAGTCAAACAGTTAATAAGATTAGGTCTAAGTAGTTTGCAGAACCATTTACATATCAAGAATGAagaaaaataatatataaaatGCAATAAAGATTACACATACACGCATGATTTTACTAAACCCTTGCCTTCCAAAGCCCATCAGTAATATAACAATTGATGCACTACTTTCACTGTTAAGGTACAGTAAGAGTTTAGTAAACAAACATATTCCTCGGTAGCGCAATCTAGCGAGCAGTCGGTTTTAATCATGTCTGTTCCATAACTTTGAACTTAGTTCTCAGTAAGAAACAGTATTTCAGTCATATCCATTCAATTGAAATACAGATAGTTTGGTGGCACAAGAAAACACactttttttattacatttttttttatatatatcgtTTTTTTGATTAGGGCATTTTAACATGGACGGGAACTGCAAtgcaagtgaaataaaaaaaacatcaagcatTTGTACCATTGTTACTGAGGACTTTTGCAGTTACCATAAGACACCTTGTGGACaggaagacactggtaatcttcAGAAGGCTGTTAGAAGTGTCGTGACCTGGCAGTTTAAAACACAGACAAGGcatgacagacaaaaaaaaaaggttaGAACCTCAGTTTTGCAGAGAGCAAAACATCAATCCCAAAATGTGAAAGACCACAAGAGCCCTTAAATCCACTTGTCTGTGGAAGTCAATATGCCAGGGCATTCAGCTCCAAAGCGTGTTCCTCATGTTCCTGATATCACAGCAGGTTTAATTATTGATGTTCTTCTTTCTCTGTTGTATGAAATAACTATAGGTATGTATTTATGTAGCGAAGCCTTTACAGTGAGATATTTAAGTGCTGATGTGACCAGATGAGGGATCCAAACAAAGTGGCTGGAAGAAACTAGTAGACatggtggatggagggagaaaatGCTTTGGCAACATCTCTATAGgggtagtatttttttttTTAGCAAAATGAGGCATGAGGATGTTGGCTGTCTAGTACAAGTGTAGCAAAGGCAGGAAGTCCCAGTGAAAATCCTCCTGGCAGCAAAAGCGGAGTCCTTTCTCCGAAGGGCTCAACTGCTTGTTGGTACAGTCCATGCTGTTCATTACAATTCTGTTATCAATAACCAGTCTGTGGAACAAGTACTGAATATCTTCAACAAAAGTATATTCCAGTTTCCTTATATCCCATCCACCCCTGTGTCCAAAAGCTTGTGAGTTTGGAGGGTTGTTGTATGTGAGCAGGTGCAGGTTAAATCAAACTCCCCACCACTGCTAAAAAGACATGGTCCCTTAAGCGTAGATTTGCCCAGGGCGAGTGTTGTCCCCAAGGCGGTCCTGGCTGGGCTGGTGCTTGGTGTCATTGGACTTTATGACACTGGCATAGTCGTAGATCCCTACCTCCAGGTTCTTAGCCCTAAGGGCTGCAGTATGTAGTTTCTCCAGAAAGTCAGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2480561 True 2603 lncRNA 0.38 2 27082144 27084777

Neighbor

gene id symbol gene type direction distance location
LOC110509891 drg1 coding upstream 9157 27056581 ~ 27072987 (+)
LOC110509890 LOC106563202 coding upstream 25930 27020227 ~ 27056214 (+)
LOC110509887 LOC106563206 coding upstream 145313 26897950 ~ 26936831 (+)
LOC110509880 LOC106563212 coding upstream 351590 26720573 ~ 26730554 (+)
LOC110509881 LOC106563214 coding upstream 361690 26699773 ~ 26720454 (+)
LOC110509893 LOC106563198 coding downstream 28709 27113486 ~ 27132244 (+)
LOC110509895 fam136a coding downstream 60567 27145344 ~ 27147704 (+)
LOC110509897 LOC106563193 coding downstream 75723 27160500 ~ 27176934 (+)
sftpba LOC106563192 coding downstream 153906 27238683 ~ 27256779 (+)
LOC100136172 LOC100136172 coding downstream 410477 27495254 ~ 27499399 (+)
G2170292 NA non-coding upstream 109575 26972308 ~ 26972569 (+)
G2170289 NA non-coding upstream 113410 26955697 ~ 26968734 (+)
G2170287 NA non-coding upstream 128804 26950160 ~ 26953340 (+)
G2170255 NA non-coding upstream 201976 26879882 ~ 26880168 (+)
G2170211 NA non-coding upstream 212232 26868624 ~ 26869912 (+)
G2170346 NA non-coding downstream 97313 27182090 ~ 27186900 (+)
G2170403 NA non-coding downstream 105290 27190067 ~ 27190382 (+)
G2170405 NA non-coding downstream 109879 27194656 ~ 27196006 (+)
G2170458 LOC106563185 non-coding downstream 237328 27322105 ~ 27324765 (+)
G2170511 NA non-coding downstream 341607 27426384 ~ 27426620 (+)
LOC110509877 LOC106563217 other upstream 549364 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 other upstream 617583 26463263 ~ 26464615 (+)
LOC110509866 LOC106563223 other upstream 1879503 24944825 ~ 25202836 (+)
LOC110509859 LOC106563234 other upstream 2549990 24500361 ~ 24532163 (+)
LOC110509837 LOC106563250 other upstream 3290480 23785060 ~ 23793640 (+)
gigyf1b LOC105024601 other downstream 1218428 28277874 ~ 28313151 (+)
LOC110509373 LOC106563396 other downstream 1594071 28678848 ~ 28681351 (+)
G2173098 NA other downstream 2474793 29559570 ~ 29559959 (+)
G2173114 NA other downstream 2500817 29585594 ~ 29587472 (+)

Expression


Co-expression Network