G2170346


Basic Information

Item Value
gene id G2170346
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 27182090 ~ 27186900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2480534
TGTCACAATGATTTATTCAAGTAGATTTCCTGGAATACATCAAAACGGTGCAGTTATATGAGCTTTATCATTGCATAAATATCAAACAAAACAGGACAAAATAGATAGCTCGCAGAAAAACCATAAGTAAAAGCATTTCACAAAACAAATGAATCCTAATTCTGTTTGAATATTTGGTTCAGAGCACAggcacagtatgtacagtatccaGTACTATATGGGAAATACTTTTactcagggatgggcaacttgtgagcaaaacattttagtggcccacCTCTTGACAGAGGATACATTTTAGAGTTcaattcctgcaattctacacattttgcaatgggaCTGAGAGAATATTTTTCCATTTTATAACAAATTTCATGCCAAATTTAATTTTTGGAAGTTGATTCCTGGGCCTACAAAAAACGGATCTGTGTACTGCTAATATATACCAATTTTCAAACCCTTTAATGTAATTTTAAAAATCTAAAGTGACCTTGAACATGAGTTGTAAACATACAAGCTATAGCAAGCAAATGTGAATAATTATAGAAAGAGTGGATTAAAGTGATGATATGTTTGACGTAAAACACATACAACGATGAGGGAAATATGccatggttaaaaaaaaatggtatcTCACCATGCGCTACATTTTGTGCTTTTTAAGCAAGCTGAAGATGGATTCCATACAATGTGGTGCTGAATATTGTAATTGATATGTAAAAAACAAGCCATTTCGAATTTTGGTGGGGTTTTAACATCTGAAATTCAATGTATTTGGTTTAGACCTTTTAAAACCAACTATAGGCTATGTAATATAGAGGCTATACTTTTAATTCTAAACCTATCAAGTAATTAGATCCATATTTTATTACCTCCTCATTGAACATACAGAATGGCTTTACAAAAACATGTTTAATTTAGGAATAAAATTAAcctttgagtttttttttttttacattaaccgGAAAAATTGGTCAACTGTCAATTTGGTAAGAGTATGGCCATTTTTACATAATTGCAGTTATCCATGTGTGCTTTATCCACAAATGTTCTGTCATTTTCTGCTATGGAGTTTTCACAGAATTGCTTCTCAGTGGTTTGGAGAGTGACATCCCCCTCTTAATAGTGTGAGACGTGACATCCTGACACATAGGCGTAGTTGCCAGTATAGCGGACCTCACAGCGCACAATGTTGTTGCTGTAGTCAGACTCTGGAACCTGATAGCTGGGGTTCACACTGATCTTCAGGACATAGTTCCCAGGTTTCACATCTGTAATATCAATCCACTGGCAGTCGATGTCTGCGTTATAGGTATCATAACATCCTGGACTAAGGCCCTGGGTGTGTGAGGTGCAAGCAAAGCGTCTGTAGTAGCCGTAGTCACAGGAGCTGTCCTCCAGGCAGAAGCTGGCCTTGTGTCCCTCAGCCACACTCCTCCCACCGGAATCCAGCAGGTCATAGTGGCTGAACTCGTCCATGCTGTGGTAATGTTGGTGACAACTGTGCCATTCCCAGGAGTAGCGCGGTCTGCTTGGCAGGAAGTCAGCCGTCCCCTGGTTCTTCACACGTTGTGGGAACCTCAGAAGCATGCGGGTGTCATAGTCTCTTGCTCTGTAGGCTGAACTTGACAAGCAGTTCTCTTCATTTGCACATCGGAGGTTGTACATAGGAACTCTCTGGACATATGCAGAGGCTTGAATGTAGTATGCATCTGGCACAAGATCAGGCAGACCGTTCTGATGGTACCTTGTGCCATATCCAGGTCTCTCTCTGCGCCTGGGACTCTCGTACACGTCATAGTAATTGTAGTAAGGATTATCTGAATCTGAGGTTTTGTATGGGTTGTAAGGATCATCTCCTGCCATCATGTCTTCTCTTCTCGGCGATGGGGATGGTTTGTCCTGTGTCCCATTCGTCGTGCCATTTGCCTTCGTTTCTGCAAGGCCACTTGGATGGGAATCCTGTTGCTGGTGCCCCTGTCCCCTAGGGGGCCTTGAAACTCGAGGTGGTATCCAGCGCGGGCGCGCTCCTGCGCCGGACACTGTGTGAATAGATGAGGGAAGCGGTCTCGATGAATCAGAGGGTTTGTTGGCTTCCCCATCgctaatgatggtgacaggtctCTCTTGGACTTGGTCTTTATCGGCGCCTCTTTGCTTTGGTGGTCGATATTCCGAGCCGTGACTCAGAAGGCTAAAAACCTTACCATTGTGCGCCCATTGTATTGTCTGCCGTAATGTACCTGCGGCTTGGTTATTTCCTGGCCTTGTCTCTGGTGGATTCCGCTGAGATTGGACAGTTTGCAGTATGCAAACGAATAAACATACGTGCGCACACGCATAAAGCGTGACAAATGAACGCACTCCCATAATACAACTAATTCAACTAAATAGGTTATGACTGATAATTACTAATATTTTACTTTATGTGGTATATCATTTTCCCGTTGAAAATAAAGTACATTCAATTACTTTTCAAAGTAAGTCTAATTTACACTACATTAAATGCTGAAAAACCTGCACCAGTATTGCTATGTTCTCCACGCAACCTCACGTCGTTCTGTCCAGAGTCTAGCAGATGCGCTaaga

Function

NR:

description
protein-lysine 6-oxidase-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2480534 True 2589 lncRNA 0.42 7 27182090 27186900

Neighbor

gene id symbol gene type direction distance location
LOC110509897 LOC106563193 coding upstream 5156 27160500 ~ 27176934 (+)
LOC110509895 fam136a coding upstream 34386 27145344 ~ 27147704 (+)
LOC110509893 LOC106563198 coding upstream 49846 27113486 ~ 27132244 (+)
LOC110509891 drg1 coding upstream 109103 27056581 ~ 27072987 (+)
LOC110509890 LOC106563202 coding upstream 125876 27020227 ~ 27056214 (+)
sftpba LOC106563192 coding downstream 51783 27238683 ~ 27256779 (+)
LOC100136172 LOC100136172 coding downstream 308354 27495254 ~ 27499399 (+)
LOC118945286 NA coding downstream 399324 27586224 ~ 27586975 (+)
prp14 prp14 coding downstream 454078 27640978 ~ 27643345 (+)
LOC110509916 LOC106563177 coding downstream 521683 27708583 ~ 27758941 (+)
G2170373 NA non-coding upstream 97313 27082144 ~ 27084777 (+)
G2170292 NA non-coding upstream 209521 26972308 ~ 26972569 (+)
G2170289 NA non-coding upstream 213356 26955697 ~ 26968734 (+)
G2170287 NA non-coding upstream 228750 26950160 ~ 26953340 (+)
G2170255 NA non-coding upstream 301922 26879882 ~ 26880168 (+)
G2170403 NA non-coding downstream 3167 27190067 ~ 27190382 (+)
G2170405 NA non-coding downstream 7756 27194656 ~ 27196006 (+)
G2170458 LOC106563185 non-coding downstream 135205 27322105 ~ 27324765 (+)
G2170511 NA non-coding downstream 239484 27426384 ~ 27426620 (+)
G2170512 NA non-coding downstream 240138 27427038 ~ 27427561 (+)
LOC110509877 LOC106563217 other upstream 649310 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 other upstream 717529 26463263 ~ 26464615 (+)
LOC110509866 LOC106563223 other upstream 1979449 24944825 ~ 25202836 (+)
LOC110509859 LOC106563234 other upstream 2649936 24500361 ~ 24532163 (+)
LOC110509837 LOC106563250 other upstream 3390426 23785060 ~ 23793640 (+)
gigyf1b LOC105024601 other downstream 1116305 28277874 ~ 28313151 (+)
LOC110509373 LOC106563396 other downstream 1491948 28678848 ~ 28681351 (+)
G2173098 NA other downstream 2372670 29559570 ~ 29559959 (+)
G2173114 NA other downstream 2398694 29585594 ~ 29587472 (+)

Expression


Co-expression Network