G2171272


Basic Information

Item Value
gene id G2171272
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 27193516 ~ 27196017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2481593
GGAGGGCAGGCCTGGACTGTGTCTCTACTCATAGTATGTTTTTTTTCCCACACATTCTGATTATTGGGATGAAAAGTATGAAAGGGAAGGGCAAAGCAAAAGAAAATAATCTCTCTGTCCGTACTGGACTTGTATTCCCAATCGGAAAAATTCACAGACTTTTGCGGGCTGGGAAGTACGCCGAACAGGTCGGGTGTAGAGCTTCCGTGTTTTTGGCTGGCGTGCTGGAGTACTTGGTCAATGAAATCCTCAAACTGGCTGGAGACTCTGCTAGGGAGGCACTCTCACCGCACATCAGCCCTCATCACATTCCTGGACTACACAAACGACAAACTTTCCCCAGAGTCTGTAAACCTTCTCCAGACTGTTGATACTGATGCAGTTTAGGTTCTCCAGGCAGATAATTCCGTATTCTgatgtgaaaacaggttttcttTCTGACCTGACATTGAAAGCGGCATTTACGAATCTTGCAGAAGTTATCATATGAATGAATAAGTATTGTCACAGGCTGCAGACAAATTAAGTGGATGCTTGTTTACACCTTCTTTCGGCAGACCTCTTCAATTACGTCATGTACATTCTATGAAAACAAGGTGCACCCAACTACCtaaaaaaacacataataatcTGAACTACCTTGGAATATGTTGTCGTTTTACCTCCATCGTTGGCCATCTAAATTTCAGTGTTTTCCTCTTTGGCCattgacttttttttattttaatataaaGGATAACCTGTCTATGACATCTATGCCCAGGACTTGCAGCACATAGATGCATTCATTGTTGATTCAATCCCAGACATACCCTTGAAAGGGAGGGAAATGTGCTATCTCCTACCATGACAGTTTCTGATAAACAGACTCCTCTGGTCGTTTTGGTTGAAGGGAAAGGCTGTGTTCAAATAGTAGCTGTACAGTGCTGTATGTGCAAATTCACTGGATTTGTTTTAAAGTGAGTGAGAAGGCACTGTGTTTGCAAGACAACCTATGACCGTTAAAGCTACGTGTCTTTTAACATTGTGTCATGGAATGTCATCTCAAAATTGATAAATTGATGCAGTTGCTTGGATGGGCCTCTTGACTGCAAGCCAAGTGTAAGAGGAGAACACTACTGAGGACACATCACATGAATGTAATCTCCACAAACCGATTCTAACCACCACGTACGTACAAGGTAGACGACATTCATAGCGAGTTGGAGACACAAATAATGTTTTGTAGGTCTCTTAAAATACAACTGCTTTGTGAAATGTCCACCAAGATACTTACCACTGTTTGGTACCTGCAACTTCTGAGTAAATGTGGCACTGTCTATTCTTCCACAAGTGCGAGTGAATTACACCATGACATTCTGGGGGCTCTAGAAATGGTTGTATGGGCCTATTAATAAAGACGTCATTTAAACGGTAAACATTTATTACCTTTTAATGtgtcatgaacacaaccagtcatattttcatctgattgtcaaacaaatcacttcaaaaagtaggctgCCTGTGAATGTTTGTCCACTCCAAAATAATTCCTGGATCCAAACTGCATGTCTACTCGtgccatttgatgaatggaaatagACATCTGTTACAGAACACCAAGAAGTGTTCCTAATGACATTCCGCTACGGTCATTGATTAGGCCTGCATGCTTCTTGCTGACAAAATTACATTTTTTGGTCAATTTGTTCACCCTAACACACACGGTCAACTTACTACACTAGGCTACAATGCCTTCAAATAGGCCTACCGGtagccagtgatgtagtggtaaaaacaATAGGTGGGTAAACTCTGCttctaaaacaaacaaaaaactcccAGTGAATTTTTCTGAAAAAGTTTGGATAACTGCGTTTACTTGCGTTTACCCTCCACCAGGCCAACACCACTGCCAGTAGCCTACCCTCTTTGCCGAGGCAATTTTACACATGAATACATGCAGAACAGGTAGCCTATATTCAATATAATACATGAGTTGACTCAAAACATGTTTTACACCCTAGTTCATGAGTTGTCCATAATTCATGAGTTAATGCATGGAGTCTTCACAGATCGTGACAAAACAATACCTTTCTTTCCATATGTTAATGACATTTATGACAGTGTTATTTGTCTTTATTAGGCATATTAACAATTTAATTAAAACGTTGAACTTAAACCCTGTACAAATCATGGATCTTGGAGATCTCGGAAAATGCACTGTAAGTGTAACTGTGCCTTCATAACATTTCAGTTTGTTTCACCGTGGAAACATTTCACACGGGCATACAAATCCAAAATAATCTGACCGAAAGAATCACCTTATAGGCCTACTGTCATTATCGTGCAGCCAGCCTACTTGTTGGATGGATTGGATGtgcattggtgtctagctgtaagCTAGTTGTCTAGTGTTATTGTTGCCCATCATCGGCTGATCCAGGGAAGAAAACAACTATTGTTAAGAAATGATAAAGCTAAATAAATGGTATActatactgaacataaatataaaca
>TU2481603
GGAGGGCAGGCCTGGACTGTGTCTCTACTCATAGTATGTTTTTTTTCCCACACATTCTGATTATTGGGATGAAAAGTATGAAAGGGAAGGGCAAAGCAAAAGAAAATAATCTCTCTGTCCGTACTGGACTTGTATTCCCAATCGGAAAAATTCACAGACTTTTGCGGGCTGGGAAGTACGCCGAACAGGTCGGGTGTAGAGCTTCCGTGTTTTTGGCTGGCGTGCTGGAGTACTTGGTCAATGAAATCCTCAAACTGGCTGGAGACTCTGCTAGGGAGGCACTCTCACCGCACATCAGCCCTCATCACATTCCTGGACTACACAAACGACAAACTTTCCCCAGAGTCTGTAAACCTTCTCCAGACTGTTGATACTGATGCAGTTTAGGTTCTCCAGGCAGATAATTCCGTATTCTgatgtgaaaacaggttttcttTCTGACCTGACATTGAAAGCGGCATTTACGAATCTTGCAGAAGTTATCATATGAATGAATAAGTATTGTCACAGGCTGCAGACAAATTAAGTGGATGCTTGTTTACACCTTCTTTCGGCAGACCTCTTCAATTACGTCATGTACATTCTATGAAAACAAGGTGCACCCAACTACCtaaaaaaacacataataatcTGAACTACCTTGGAATATGTTGTCGTTTTACCTCCATCGTTGGCCATCTAAATTTCAGTGTTTTCCTCTTTGGCCattgacttttttttattttaatataaaGGATAACCTGTCTATGACATCTATGCCCAGGACTTGCAGCACATAGATGCATTCATTGTTGATTCAATCCCAGACATACCCTTGAAAGGGAGGGAAATGTGCTATCTCCTACCATGACAGTTTCTGATAAACAGACTCCTCTGGTCGTTTTGGTTGAAGGGAAAGGCTGTGTTCAAATAGTAGCTGTACAGTGCTGTATGTGCAAATTCACTGGATTTGTTTTAAAGTGAGTGAGAAGGCACTGTGTTTGCAAGACAACCTATGACCGTTAAAGCTACGTGTCTTTTAACATTGTGTCATGGAATGTCATCTCAAAATTGATAAATTGATGCAGTTGCTTGGATGGGCCTCTTGACTGCAAGCCAAGTGTAAGAGGAGAACACTACTGAGGACACATCACATGAATGTAATCTCCACAAACCGATTCTAACCACCACGTACGTACAAGGTAGACGACATTCATAGCGAGTTGGAGACACAAATAATGTTTTGTAGGTCTCTTAAAATACAACTGCTTTGTGAAATGTCCACCAAGATACTTACCACTGTTTGGTACCTGCAACTTCTGAGTAAATGTGGCACTGTCTATTCTTCCACAAGTGCGAGTGAATTACACCATGACATTCTGGGGGCTCTAGAAATGGTTGTATGGGCCTATTAATAAAGACGTCATTTAAACGGTAAACATTTATTACCTTTTAATGtgtcatgaacacaaccagtcatattttcatc
>TU2481607
GACATCTATGCCCAGGACTTGCAGCACATAGATGCATTCATTGTTGATTCAATCCCAGACATACCCTTGAAAGGGAGGGAAATGTGCTATCTCCTACCATGACAGTTTCTGATAAACAGACTCCTCTGGTCGTTTTGGTTGAAGGGAAAGGCTGTGTTCAAATAGTAGCTGTACAGTGCTGTATGTGCAAATTCACTGGATTTGTTTTAAAGTGAGTGAGAAGGCACTGTGTTTGCAAGACAACCTATGACCGTTAAAGCTACGTGTCTTTTAACATTGTGTCATGGAATGTCATCTCAAAATTGATAAATTGATGCAGTTGCTTGGATGGGCCTCTTGACTGCAAGCCAAGTGTAAGAGGAGAACACTACTGAGGACACATCACATGAATGTAATCTCCACAAACCGATTCTAACCACCACGTACGTACAAGGTAGACGACATTCATAGCGAGTTGGAGACACAAATAATGTTTTGTAGGTCTCTTAAAATACAACTGCTTTGTGAAATGTCCACCAAGATACTTACCACTGTTTGGTACCTGCAACTTCTGAGTAAATGTGGCACTGTCTATTCTTCCACAAGTGCGAGTGAATTACACCATGACATTCTGGGGGCTCTAGAAATGGTTGTATGGGCCTATTAATAAAGACGTCATTTAAACGGTAAACATTTATTACCTTTTAATGtgtcatgaacacaaccagtcatattttcatc
>TU2481594
GACATCTATGCCCAGGACTTGCAGCACATAGATGCATTCATTGTTGATTCAATCCCAGACATACCCTTGAAAGGGAGGGAAATGTGCTATCTCCTACCATGACAGTTTCTGATAAACAGACTCCTCTGGTCGTTTTGGTTGAAGGGAAAGGCTGTGTTCAAATAGTAGCTGTACAGTGCTGTATGTGCAAATTCACTGGATTTGTTTTAAAGTGAGTGAGAAGGCACTGTGTTTGCAAGACAACCTATGACCGTTAAAGCTACGTGTCTTTTAACATTGTGTCATGGAATGTCATCTCAAAATTGATAAATTGATGCAGTTGCTTGGATGGGCCTCTTGACTGCAAGCCAAGTGTAAGAGGAGAACACTACTGAGGACACATCACATGAATGTAATCTCCACAAACCGATTCTAACCACCACGTACGTACAAGGTAGACGACATTCATAGCGAGTTGGAGACACAAATAATGTTTTGTAGGTCTCTTAAAATACAACTGCTTTGTGAAATGTCCACCAAGATACTTACCACTGTTTGGTACCTGCAACTTCTGAGTAAATGTGGCACTGTCTATTCTTCCACAAGTGCGAGTGAATTACACCATGACATTCTGGGGGCTCTAGAAATGGTTGTATGGGCCTATTAATAA
>TU2481595
AATCGGAAAAATTCACAGACTTTTGCGGGCTGGGAAGTACGCCGAACAGGTCGGGTGTAGAGCTTCCGTGTTTTTGGCTGGCGTGCTGGAGTACTTGGTCAATGAAATCCTCAAACTGGCTGGAGACTCTGCTAGGGAGGCACTCTCACCGCACATCAGCCCTCATCACATTCCTGGACTACACAAACGACAAACTTTCCCCAGAGTCTGTAAACCTTCTCCAGACTGTTGATACTGATGCAGTTTAGGTTCTCCAGGCAGATAATTCCGTATTCTgatgtgaaaacaggttttcttTCTGACCTGACATTGAAAGCGGCATTTACGAATCTTGCAGAAGTTATCATATGAATGAATAAGTATTGTCACAGGCTGCAGACAAATTAAGTGGATGCTTGTTTACACCTTCTTTCGGCAGACCTCTTCAATTACGTCATGTACATTCTATGAAAACAAGGTGCACCCAACTACCtaaaaaaacacataataatcTGAACTACCTTGGAATATGTTGTCGTTTTACCTCCATCGTTGGCCATCTAAATTTCAGTGTTTTCCTCTTTGGCCattgacttttttttattttaatataaaGGATAACCTGTCTATGACATCTATGCCCAGGACTTGCAGCACATAGATGCATTCATTGTTGATTCAATCCCAGACATACCCTTGAAAGGGAGGGAAATGTGCTATCTCCTACCATGACAGTTTCTGATAAACAGACTCCTCTGGTCGTTTTGGTTGAAGGGAAAGGCTGTGTTCAAATAGTAGCTGTACAGTGCTGTATGTGCAAATTCACTGGATTTGTTTTAAAGTGAGTGAGAAGGCACTGTGTTTGCAAGACAACCTATGACCGTTAAAGCTACGTGTCTTTTAACATTGTGTCATGGAATGTCATCTCAAAATTGATAAATTGATGCAGTTGCTTGGATGGGCCTCTTGACTGCAAGCCAAGTGTAAGAGGAGAACACTACTGAGGACACATCACATGAATGTAATCTCCACAAACCGATTCTAACCACCACGTACGTACAAGGTAGACGACATTCATAGCGAGTTGGAGACACAAATAATGTTTTGTAGGTCTCTTAAAATACAACTGCTTTGTGAAATGTCCACCAAGATACTTACCACTGTTTGGTACCTGCAACTTCTGAGTAAATGTGGCACTGTCTATTCTTCCACAAGTGCGAGTGAATTACACCATGACATTCTGGGGGCTCTAGAAATGGTTGTATGGGCCTATTAATAA
>TU2481600
GGAGGGCAGGCCTGGACTGTGTCTCTACTCATAGTATGTTTTTTTTCCCACACATTCTGATTATTGGGATGAAAAGTATGAAAGGGAAGGGCAAAGCAAAAGAAAATAATCTCTCTGTCCGTACTGGACTTGTATTCCCAATCGGAAAAATTCACAGACTTTTGCGGGCTGGGAAGTACGCCGAACAGGTCGGGTGTAGAGCTTCCGTGTTTTTGGCTGGCGTGCTGGAGTACTTGGTCAATGAAATCCTCAAACTGGCTGGAGACTCTGCTAGGGAGGCACTCTCACCGCACATCAGCCCTCATCACATTCCTGGACTACACAAACGACAAACTTTCCCCAGAGTCTGTAAACCTTCTCCAGACTGTTGATACTGATGCAGTTTAGGTTCTCCAGGCAGATAATTCCGTATTCTgatgtgaaaacaggttttcttTCTGACCTGACATTGAAAGCGGCATTTACGAATCTTGCAGAAGTTATCATATGAATGAATAAGTATTGTCACAGGCTGCAGACAAATTAAGTGGATGCTTGTTTACACCTTCTTTCGGCAGACCTCTTCAATTACGTCATGTACATTCTATGAAAACAAGGTGCACCCAACTACCtaaaaaaacacataataatcTGAACTACCTTGGAATATGTTGTCGTTTTACCTCCATCGTTGGCCATCTAAATTTCAGTGTTTTCCTCTTTGGCCattgacttttttttattttaatataaaGGATAACCTGTCTATGACATCTATGCCCAGGACTTGCAGCACATAGATGCATTCATTGTTGATTCAATCCCAGACATACCCTTGAAAGGGAGGGAAATGTGCTATCTCCTACCATGACAGTTTCTGATAAACAGACTCCTCTGGTCGTTTTGGTTGAAGGGAAAGGCTGTGTTCAAATAGTAGCTGTACAGTGCTGTATGTGCAAATTCACTGGATTTGTTTTAAAGTGAGTGAGAAGGCACTGTGTTTGCAAGACAACCTATGACCGTTAAAGCTACGTGTCTTTTAACATTGTGTCATGGAATGTCATCTCAAAATTGATAAATTGATGCAGTTGCTTGGATGGGCCTCTTGACTGCAAGCCAAGTGTAAGAGGAGAACACTACTGAGGACACATCACATGAATGTAATCTCCACAAACCGATTCTAACCACCACGTACGTACAAGGTAGACGACATTCATAGCGAGTTGGAGACACAAATAATGTTTTGTAGGTCTCTTAAAATACAACTGCTTTGTGAAATGTCCACCAAGATACTTACCACTGTTTGGTACCTGCAACTTCTGAGTAAATGTGGCACTGTCTATTCTTCCACAAGTGCGAGTGAATTACACCATGACATTCTGGGGGCTCTAGAAATGGTTGTATGGGCCTATTAATAA

Function

NR:

description
PREDICTED: histone H2A-beta, sperm-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2481593 False 2502 lncRNA 0.40 1 27193516 27196017
TU2481603 False 1468 TUCP 0.41 1 27194550 27196017
TU2481607 False 720 lncRNA 0.41 1 27194550 27195269
TU2481594 False 649 lncRNA 0.42 1 27194621 27195269
TU2481595 False 1258 lncRNA 0.42 1 27194621 27195878
TU2481600 True 1397 TUCP 0.42 1 27194621 27196017

Neighbor

gene id symbol gene type direction distance location
LOC110509899 lyox coding downstream 5558 27182086 ~ 27187958 (-)
LOC110509900 LOC106563194 coding downstream 11526 27178064 ~ 27181990 (-)
LOC110509898 LOC106563195 coding downstream 33860 27150806 ~ 27159656 (-)
LOC110509896 NA coding downstream 48785 27139133 ~ 27144731 (-)
si:dkey-200l5.4 LOC106563199 coding downstream 56992 27132397 ~ 27136524 (-)
LOC110509901 LOC100380666 coding upstream 2245 27198262 ~ 27204531 (-)
mat2aa LOC106563191 coding upstream 60973 27256990 ~ 27263271 (-)
LOC110509904 LOC106563189 coding upstream 83379 27279396 ~ 27289395 (-)
LOC110509905 LOC106563188 coding upstream 93927 27289944 ~ 27307031 (-)
LOC110509906 LOC106563187 coding upstream 112230 27308247 ~ 27318113 (-)
G2171250 NA non-coding downstream 59316 27133624 ~ 27134200 (-)
LOC118945257 NA non-coding downstream 137251 27053399 ~ 27057267 (-)
G2171142 NA non-coding downstream 256711 26906833 ~ 26936805 (-)
G2171146 NA non-coding downstream 283655 26909606 ~ 26909861 (-)
G2171131 NA non-coding downstream 295041 26898036 ~ 26898475 (-)
G2171302 NA non-coding upstream 65354 27261371 ~ 27356406 (-)
G2171334 NA non-coding upstream 97440 27293457 ~ 27296981 (-)
G2171346 NA non-coding upstream 139866 27335883 ~ 27336190 (-)
G2171376 NA non-coding upstream 227588 27423605 ~ 27423825 (-)
G2171299 NA non-coding upstream 230993 27427010 ~ 27428201 (-)
G2169325 NA other downstream 1186644 26006141 ~ 26006872 (-)
LOC110509871 LOC106563220 other downstream 1602626 25584559 ~ 25607056 (-)
LOC110509868 LOC106563221 other downstream 1726604 25447869 ~ 25528834 (-)
G2167965 LOC106563228 other downstream 2323706 24847153 ~ 24869810 (-)
LOC110509858 LOC106563233 other downstream 2660366 24530156 ~ 24537449 (-)
G2171531 NA other upstream 561966 27757983 ~ 27760702 (-)
G2171619 NA other upstream 739437 27935454 ~ 27936813 (-)
LOC110509923 LOC105024622 other upstream 1061029 28256809 ~ 28265547 (-)
LOC110509931 mpp1 other upstream 1365145 28561162 ~ 28576997 (-)
G2172414 NA other upstream 1623733 28819750 ~ 28820509 (-)

Expression


Co-expression Network