G2171620


Basic Information

Item Value
gene id G2171620
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 27937562 ~ 27939642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2481997
CAtggtgcagaaaatacacaagagttcagggaccttaacaaagttaaccattttcactgtagtgtccaaaacgtctttcaagctgtcaggcattcccgtGGCAGCAGGAACCTCTCactggatgctgcagtgtactcaAGTGGagttgggagcaactgcttgcacgcccgttaccactccactatgtctccctgtcatggcttttgcgccatcagtacagataccaacacatctagatcatCAATGTCCATTTgctgtcacaaagctgtccagtacttacaAAATATCctttcctgttgtcctggtttccagtggtttgcagaagaggatgtttaattgaccccccataaatgtaACGGATATATACAAGGAGCTGTGCCAGgtccgccacgtctgttgactcatccagctgtaacgcatataattcactggcttgtatgtgaagcagtaattgtttcaaaacatctcctgccatgtcactgatgtgaGGCAAAGGAAGTTCAATAGTTCTGAGATAGAATGTGAGACAAAGGAAGTTCAATAGTTCAGAGATAGAATGTGAGACAAAGGAAGTTCAATAGTTCTGAGATAGAATGTGAGACAAAGGAAGTTCAATAGTTCTGAGATAGAATGTGAGACAGAGAAAGTTCAAAGTTCTGAGATAGAATGTGAGACAGAGAAAGTTCAAAGTTCTGAGATAGAATGTGAAACAAACAAAGTTCAATAGTTTTGAGATAGAATGTGAGACAAACAAAGTTCAATAGTTCTGAGAGAATGTGAGACAAACAAAGTTCAATAGTTCTGAGATAGAATGTGAGACAAAGGAAGTTCAATATTTCAGAGATAGAATGTGAAACAAACAAAGTTCACTAGTTCTGATATAGAATGTGAGACGGAGAAAGTTCACTAGTTCTGATATAGAATGTGAGACGGAGAAAGTTCAATAGTTCAGAGATAGAATGTGAAACAAACAAAGTTCACTAGTTCTGATATAGAATGTGAGACGGAGAAAGTTCAATAGTTTTGAGATAGAATGTGAGACAGAGAAAGTTCAAAGTGCTGAGATAGAATGTGAAACAAACAAAGTTCAATAGTTCTGAGATAGAATGTGAGACAGAGAAAGTTCAAAGTTCTGAGATAGAATGTGAAACAAACAAAGTTCAATAGTTCTGAGATAGAATGTGAGACAAACAAAGTTCACTAGTTCTGATATAGAATGTGAGACGGAGAAAGTTCAATAGTTCTGAAATTGGATGTGAAGCAGAGAAAGTTAAATAGTTCTGAAATATAATGTGAGGCAGGGCTCTTAGATTCTGATATTGAGAGTATGCCAGAGAGATCTTTACCTGGTTGAGGCAAAAATAAAAACACCGGTAGCGTTCGCCAGCTTAGAGTACTTAACACCTCTGAACAGACTGCCAGCTGTAATTTGCAAACAGAGTGCAAACATGTAGAATCGCTGACTGCCGCCCACCATCAAGTGGTCCCTAAAACCAACCTGGCGAATGAACGGCAGATCAATATTTGGTGAGGTGTATGCCTAAGACAGAGCAGGTCCCATGAAGTGAGGGGTAGTGACATTGAGAATGTGGTTCACACATGCCCTCTCATATGTGCTTGGAAGTCACGCTTCATTTCCTGCTCAATCTCCCCAACTAGTGTTCTATGTGTCTACTGCCCAGTACCCTTCGCTGTAgcacactatgtgtgtgtgtgtctttgtacatgtaggtgtgtGTAAGACTGACTGAGTGAGTGTAATGACCtacctgtatgtgtgtatgagtgtgtgagagagaaaaaggagagaaagaaagaggaaaagATAGAAAAAGAGGGCATGAGAGTGACGATCAATAGACTCAATAAAAGCCAAGCTGGAGAGCAATAGTCTAGCGTTGAGAGCAATAATTTCCCTTAGGTGCAGAGGGGGGAGCAAACCAAGTTTGTTGATAATGAACTCAGAGCAGTGTTGTCCGATTCCAACCTGTAAACTGGACAAAGTGGCCTCTTTCACAACAGCTGTGGGGGAGATATTATTCCATCTTATGGCACACTTTAGAGACCAATAGCCCAATAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2481997 True 2081 lncRNA 0.41 1 27937562 27939642

Neighbor

gene id symbol gene type direction distance location
LOC110509921 cldx coding downstream 37662 27895651 ~ 27899900 (-)
LOC110509920 NA coding downstream 47273 27865704 ~ 27890289 (-)
LOC110509400 NA coding downstream 87607 27843800 ~ 27849955 (-)
LOC110509919 LOC106563174 coding downstream 97884 27823605 ~ 27839678 (-)
ugt5g2 NA coding downstream 115385 27820027 ~ 27822177 (-)
LOC110509401 LOC106563170 coding upstream 979 27940621 ~ 28015435 (-)
LOC118945284 NA coding upstream 49008 27988650 ~ 27989608 (-)
LOC110509923 LOC105024622 coding upstream 317167 28256809 ~ 28265547 (-)
LOC110509372 LOC106563382 coding upstream 328465 28268107 ~ 28269824 (-)
LOC110509924 LOC106563379 coding upstream 330950 28270592 ~ 28273502 (-)
G2171638 NA non-coding downstream 13903 27923457 ~ 27923659 (-)
G2171623 NA non-coding downstream 34767 27901735 ~ 27902795 (-)
G2171577 NA non-coding downstream 103462 27833363 ~ 27834100 (-)
G2171570 NA non-coding downstream 108945 27828264 ~ 27828617 (-)
G2171644 NA non-coding upstream 6989 27946631 ~ 27946870 (-)
G2171649 NA non-coding upstream 11798 27951440 ~ 27952621 (-)
G2171648 NA non-coding upstream 14073 27953715 ~ 27954107 (-)
G2171668 NA non-coding upstream 45598 27985240 ~ 27985568 (-)
G2171719 NA non-coding upstream 124796 28064438 ~ 28069007 (-)
G2171619 NA other downstream 749 27935454 ~ 27936813 (-)
G2171531 NA other downstream 176860 27757983 ~ 27760702 (-)
G2171272 NA other downstream 741545 27193516 ~ 27196017 (-)
G2169325 NA other downstream 1930690 26006141 ~ 26006872 (-)
LOC110509871 LOC106563220 other downstream 2346672 25584559 ~ 25607056 (-)
LOC110509931 mpp1 other upstream 621520 28561162 ~ 28576997 (-)
G2172414 NA other upstream 880108 28819750 ~ 28820509 (-)
G2173258 LOC106563498 other upstream 1485081 29424723 ~ 29427867 (-)
G2174066 NA other upstream 2004823 29944465 ~ 29945418 (-)

Expression


Co-expression Network