G2171719


Basic Information

Item Value
gene id G2171719
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 28064438 ~ 28069007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2482107
gcaatatgttagccctatgttaggttacctcagcactatgttaggtcacctcagcagcatgttaggttacctcagcagtacggtaggttacctcagtagtatgttaggttacctcagcagtatgttaggttacctcagcagtatgttaagtTACCCCAACAGTATTTAGgatacctcagcagtatgttatcagtatgttaggttacatcagcagtatgttaggttacctcagcaaattgttaggttacctcagaaGTACGTTAGTTCAccccagcagtatgttagcagtatGAAAGGTTACCTTAGCAGTATGTTAGCAGTacattaggttacctcagcagaatgttaggttaccttagcagtatgttaggttacctcagcagtatgttaggttacctaaGAAGTATATTAGGTTGCCTCAGCAGAATGTTAGGTTACcttagcagtatgttaggttacctcagcagtacgttagGTTACCCCAGCAGAATGTTAGCAATATGtttggttacctcagcagtatgttaggttacctcagcagtaagttaggttacctcagcagtatgttaggttacctcagcaggatgttaggttacctcagcagtatgttaagttacctcggcagtatgttaggttacctcagcagcatgttagtcctcagcagcatgttaggttacctcagcactatgttaggttacctcagcagtaagttaggttacctcagcaatatGTTAGGTTACCACAGCAgtaagttagattacctcagcagtatgttaggttacctcagcagtatgttagcactatgttaggttacctcagcagtatgttaggttacctcagcagtaagttaggttacct

Function

NR:

description
PREDICTED: shematrin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2482107 True 858 lncRNA 0.42 2 28064438 28069007

Neighbor

gene id symbol gene type direction distance location
LOC110509401 LOC106563170 coding downstream 49003 27940621 ~ 28015435 (-)
LOC118945284 NA coding downstream 74830 27988650 ~ 27989608 (-)
LOC110509921 cldx coding downstream 164538 27895651 ~ 27899900 (-)
LOC110509920 NA coding downstream 174149 27865704 ~ 27890289 (-)
LOC110509400 NA coding downstream 214483 27843800 ~ 27849955 (-)
LOC110509923 LOC105024622 coding upstream 187802 28256809 ~ 28265547 (-)
LOC110509372 LOC106563382 coding upstream 199100 28268107 ~ 28269824 (-)
LOC110509924 LOC106563379 coding upstream 201585 28270592 ~ 28273502 (-)
LOC110509403 LOC106603218 coding upstream 207439 28276446 ~ 28279590 (-)
LOC110509929 LOC106563388 coding upstream 462990 28531997 ~ 28536813 (-)
G2171668 NA non-coding downstream 78870 27985240 ~ 27985568 (-)
G2171648 NA non-coding downstream 110331 27953715 ~ 27954107 (-)
G2171649 NA non-coding downstream 111817 27951440 ~ 27952621 (-)
G2171644 NA non-coding downstream 117568 27946631 ~ 27946870 (-)
G2171620 NA non-coding downstream 124796 27937562 ~ 27939642 (-)
G2171725 NA non-coding upstream 6698 28075705 ~ 28082641 (-)
G2171728 NA non-coding upstream 37760 28106767 ~ 28135613 (-)
G2171747 NA non-coding upstream 84611 28153618 ~ 28159667 (-)
G2171753 NA non-coding upstream 94298 28163305 ~ 28163587 (-)
G2172043 NA non-coding upstream 95575 28164582 ~ 28256266 (-)
G2171619 NA other downstream 127625 27935454 ~ 27936813 (-)
G2171531 NA other downstream 303736 27757983 ~ 27760702 (-)
G2171272 NA other downstream 868421 27193516 ~ 27196017 (-)
G2169325 NA other downstream 2057566 26006141 ~ 26006872 (-)
LOC110509871 LOC106563220 other downstream 2473548 25584559 ~ 25607056 (-)
LOC110509931 mpp1 other upstream 492155 28561162 ~ 28576997 (-)
G2172414 NA other upstream 750743 28819750 ~ 28820509 (-)
G2173258 LOC106563498 other upstream 1355716 29424723 ~ 29427867 (-)
G2174066 NA other upstream 1875458 29944465 ~ 29945418 (-)

Expression


Co-expression Network