XLOC_000406 (kctd12.2)


Basic Information

Item Value
gene id XLOC_000406
gene name kctd12.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34295925 ~ 34297403 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000694
ACTCTTCTTCAGTTCTGTGATTGCACTGGAGGTCTCGCGCAGCTGTGCAAAGATGGATAAGACTCGCGCGGACGCTTCTTCACCGCGATTCTCCGAAATCATTGAGCTCAATGTCGGAGGGCAAGTTTACGTTACGCGCCACTCAACTTTGCTCTCCGTGCCCAATTCTTTACTTTGGACCATGTTCAGTCAGAAGAAACCCGCGGAACTTACTACCGACAGCAAAGGACGCTTCTTTTTGGACAGGGACGGCTTTTTGTTCCGTTATATTTTGGATTACTTGCGGGACCAGACTCTGGTTTTGCCTGATTACTTCAAAGAGAAAGCGAGCCTCCTCAAAGAGGCAGAATATTTCCAACTTCAAGACCTGGCAAAGCGCCTGAAACCTGCGGTCAGTAAGGAGAACTCCATCAGCGAGGAGGTTTGCCAGAGCGACCCGGAGGAGGCTGCGCTCGCCGGAACCAGCATGACCTGCACCGGCCCCCGCTCACCGTCTTTGGACGCGAGGAAAACCGGCTTCATAACCATCGGGTACAGGGGCTCCTACACTATAGGACGAGACCTTCAACAGGACGCCAAATTCCGACGGGTGGCGAGAATCACTGTGTGCGGCAAAACGTCTCTCGCCAAAGAAGTTTTCGGGGAGACGCTGAACGAGAGCAGAGACCCCGACAGACCCCCAGAGAGATACACATCTCGGTATTACCTGAAGTATAATTTCCTGGAGCAAGCCTTTGACAGGCTGGCAGAGGTGGGCTTCCACATGGTTGCGTGCAGCTCTACGGGCACCTGTGCGTACGCGAGTAACGACCCCAACGAGGACAAAATCTGGACGAGTTACACCGAGTATGTTTTTTGTAGGGAGTGAAGTACTGTAGTGGACTCACTTGGGAACTGTTATTCAAACACATTTCTCGAACACTCACATTTCTATTCGTTGCGCGCAACGAACGTGTAGTTGTGTGCCACAATGTCAATATGTCAAGACGAATTAGGGACCATCAATCgctgcgaaaaaaaaaaatatgcatattttgtgtgtaaaaataaTTTAACTGCGGATCAACTAAATCTGCTGTCTGTTCTCAGAAGTTTTAGCATTTAGTTGGAGAAAGCACAAAATATACTCTGAATAATCAAATTAGTACCACCaaagtttttaatattatgtGAGTTTAACAGTGAATCACATTCACACTTGTATTATTTTCTATCAATTTATGTGGGATTATTGTTCAGCTTTTTATTGAGTAGCCTGCATCCAGAATcttagcaaacaaaacaaaactaaatgtcGACCAGAATATTAATTTAGCAACGTTTTCTAAAACATTTACTCCCACCCGTCTGCTTTTCACTGAACCTTGATGcatcacatttgtttttgttcgTGTGTATTTGCactatgtgttttatttttttcttatacaaCATGTCTGTCAGCTTCACACACATAATAAACTAATCATGAAAGACACA

Function

symbol description
kctd12.2 Acts upstream of or within habenula development and regulation of dendrite morphogenesis. Predicted to be active in postsynaptic membrane and presynaptic membrane. Is expressed in brain. Orthologous to human KCTD12 (potassium channel tetramerization domain containing 12).

GO:

id name namespace
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process
GO:0021986 habenula development biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060117-4 Acts upstream of or within habenula development and regulation of dendrite morphogenesis. Predicted to be active in postsynaptic membrane and presynaptic membrane. Is expressed in brain. Orthologous to human KCTD12 (potassium channel tetramerization domain containing 12).

Ensembl:

ensembl_id ENSDARG00000053542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000694 True 1479 mRNA 0.45 1 34295925 34297403

Neighbor

gene id symbol gene type direction distance location
XLOC_000405 slc5a7a coding upstream 33932 34243650 ~ 34261993 (+)
XLOC_000404 arl6 coding upstream 61869 34203817 ~ 34234056 (+)
XLOC_000402 epha6 coding upstream 94730 33969015 ~ 34201195 (+)
XLOC_000403 dre-mir-734 coding upstream 172953 34122880 ~ 34122972 (+)
XLOC_000401 CT573012.1 coding upstream 328652 33967157 ~ 33967273 (+)
XLOC_000407 CR848003.1 coding downstream 102837 34400240 ~ 34400354 (+)
XLOC_000408 NA coding downstream 153256 34450659 ~ 34454447 (+)
XLOC_000409 klf12a coding downstream 199452 34496855 ~ 34558804 (+)
XLOC_000410 gpalpp1 coding downstream 388002 34685405 ~ 34694365 (+)
XLOC_000411 gtf2f2a coding downstream 397970 34695373 ~ 34706903 (+)
XLOC_000400 CU915566.1 non-coding upstream 560791 33735018 ~ 33735134 (+)
XLOC_000394 NA non-coding upstream 777102 33517802 ~ 33518823 (+)
XLOC_000390 BX322647.1 non-coding upstream 1079207 33215241 ~ 33216718 (+)
XLOC_000414 NA non-coding downstream 559965 34857368 ~ 34861057 (+)
XLOC_000415 NA non-coding downstream 736891 35034294 ~ 35093512 (+)
XLOC_000421 NA non-coding downstream 1598989 35896392 ~ 35898437 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location