G2172497


Basic Information

Item Value
gene id G2172497
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 28919570 ~ 28919984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2482988
ttatagaatagcatgtcatatcacttaatccggcatagccaaagacacgacagagtcattaaaactcgtttttcaaggactttgtgcatgacacaagtaatttttccaacaattgtttacagacagattatttcacttataactcactgtatcacaattccagtgggtcagaagtttacatacactaagttggctgtgcctttaaacagcttggaaaattccagaaaattatgtcatggctttagaagcttctgttgggctaattgacatcatttgagtcaatttgaggtgtacctgttaatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatggaaaaattaaaagaaaat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2482988 True 370 lncRNA 0.36 2 28919570 28919984

Neighbor

gene id symbol gene type direction distance location
LOC110509373 LOC106563396 coding upstream 238219 28678848 ~ 28681351 (+)
LOC118945687 NA coding upstream 288038 28631455 ~ 28631532 (+)
LOC118945694 NA coding upstream 288628 28630810 ~ 28630942 (+)
LOC118945700 NA coding upstream 289251 28630135 ~ 28630319 (+)
LOC118945688 NA coding upstream 291059 28628432 ~ 28628511 (+)
cmc4 cmc4 coding downstream 178290 29098274 ~ 29099084 (+)
LOC110509944 LOC106603168 coding downstream 209878 29129862 ~ 29173579 (+)
LOC110509953 dipa coding downstream 359364 29279348 ~ 29280885 (+)
LOC110509956 LOC106563505 coding downstream 366414 29286398 ~ 29290760 (+)
LOC110509954 LOC106563504 coding downstream 370984 29290968 ~ 29298599 (+)
G2172416 NA non-coding upstream 94044 28825309 ~ 28825526 (+)
G2172396 NA non-coding upstream 109286 28809980 ~ 28810284 (+)
G2172394 NA non-coding upstream 109881 28809444 ~ 28809689 (+)
G2172373 NA non-coding upstream 124167 28795153 ~ 28795403 (+)
G2172365 NA non-coding upstream 142240 28777075 ~ 28777330 (+)
G2172501 NA non-coding downstream 7577 28927561 ~ 28928131 (+)
G2172502 NA non-coding downstream 7891 28927875 ~ 28928715 (+)
G2172432 NA non-coding downstream 40003 28959987 ~ 28979045 (+)
G2172765 NA non-coding downstream 184963 29104947 ~ 29105482 (+)
gigyf1b LOC105024601 other upstream 606419 28277874 ~ 28313151 (+)
G2170458 LOC106563185 other upstream 1594805 27322105 ~ 27324765 (+)
LOC110509877 LOC106563217 other upstream 2386790 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 other upstream 2455009 26463263 ~ 26464615 (+)
G2173098 NA other downstream 639586 29559570 ~ 29559959 (+)
G2173114 NA other downstream 665610 29585594 ~ 29587472 (+)
LOC110509970 LOC106563483 other downstream 732585 29652518 ~ 29662236 (+)
LOC110509988 tmem261 other downstream 949154 29869091 ~ 29874237 (+)
G2173551 vps51 other downstream 974110 29894094 ~ 29896279 (+)

Expression


Co-expression Network