G2172679 (LOC106563399)


Basic Information

Item Value
gene id G2172679
gene name LOC106563399
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 28973634 ~ 28978973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2483176
AAACATAATTTCCGTATTGTCATTAGCCCCACAAACAAACCTTCACAACAGAGAAAAATCAACATTTTCAGTCAGGGTTCTACAAAAAAACAACTCCACCTCTGACAGATTGACGTCACCATTACACcgtagtctttaaaaaaaaaaacagcaacacaGCGAGTCGTCAAATAAACCCCCTCGCAGACACTCTGCCTTCATATCAACAATAAGATCAAATCACATCAGATATGCTGGCTACTGATCAGTTGAATAATTGTGTATTTGATCATTGCATCCTTTAATACAGCAGGACAGAGCACAGTGCCACATAAGATTCAGAAGAAGCCGCAGGTTTCCACACAGGTTAAATATGCAAGCTCACTGTTTCCTGAAACTAGGTCACTGTGATGAAAGATGTCAAATGTGCTTGGCTTAATTAACTTTGGGGTCACAGGGATAGTGCAGCATTCACAGTGCAGTACACCAATCCAAACTTAGTACAGTCAGAAAAACTGTGGTTATGAATAAAACTCTTATACTTAATGTATAATTGATCATGTCTTTTATCATAGCAAGGAAAAGCAACCTAGCCACTTTATAGTCAAAACTATTCTACAGTAGAACCTCAGATATTCATGGCACATTTTCCACACATCCTTCTTCTCTCTAATGCGtgcaaagaaaaaaaagagaggttATTTGGCTCTAAATATAATGGACTAGATGACCCACCTCCTTATACAATTCAATACTGAACAGGAAGTGAACCACCAGAGAATGACTTTGACCTTCTGTTTGTCTTGTCTGACAACATACTGTTTGTGCACAGTTCCAAACTGTAGTTGACAGTCACTTGACTATCCTAAGCAATAATTTGGCTGAGCATCTGAAATGACACACTATCGAGTAGTGTTTTACCCCTGCCATTAAATCATTTACTGATGCGAATGGGTCAGCTGTTGACGCATAATATGGAGAATGTCCATCATCAACGCCTCGATGCATGTTAAACAGGTCAGGGTCTGGCTATGCAAATGTAATCTCCCACACAACTCGCCTGCTTTATCAAATTGTGTCTTAATTAACGCCCTTCAGATATTTTTAATGCCAAACCAAATCTCTCTGAGAGCAAAACATGAAACGATGAAATATCCTTGGGCACATAATTTCTCTACTCTTTTTCGAAAAGGTCATTTGGCACAACAAATAATCTGTAAATAATGGAGATATACTGAATGGTTGAGGCAACAAATCATAAACGGTACATATTGAGGCAGACATTTCATCATCATTGACTTGTGACTATATTTCAGCTGTGGGGTGATTCACATCACCCGCTCCCTTCTCCACTAAATAAAAAAGTGTggacactcctgtataatatctataGTCTCCATCTGCTGTCCTTGTATTTGTATGCAGTACATCACAAAAAAGACACTCCAAGTGTCAGGTGACTGTTCCTTGGTGCAATCAAGAATGCCAACACAGATTGTGCAGTCGGTGCCTTGTCCCATATGGGATTTCCTTGTTCCGTCCTTCTTTTTGCATTGAATCACAGTGCGAACACCACTAACAAAATGAATAGCATGCGCTAGAGTACAGTCCAAATGACAGAGGTAACCACCAAGAGGCGCAAGATTTATGTTTCAATGAGACACATGTCAAAACTCACCAGATGACTCGGGcagatttttttcatttttttgctGTTTAAAGGCTTTTTCCCCCTCACCCTTTTGTATGGTTACTTAATACACAAGTCTACATACAATGTCCTTGAAATCCCAACTGTCATTTACAATTTTCTGAGCAGTGAGCAGACAAAGGAGAAAGGGCTCTTTAACATACAGGGTCCTGTCATTGAGAGTAACGGGATAGATGCTTCAACATGGGATTGCAACGACTAGCACGGCCAATACAGAGACCTACTGCCAGAGTCCATAGTCATCTGGGAGCTCTCTGTGTGGAGGCAGTCTCCACTCCCTCAGTGCTTTGGGACATGCAGTTAAATCACAGGAGGAcagggtacagtatgtacagcagcATCAATTGCAGACAAGGCATCCGGTCATTCAGAGTTAGGTATGAAAAGTACACGCAAGGTACTGATCTTGCTGCGAAGCCACGCATCACCAATGTCAATGTATCATAGCATTGAAGGGGCTTCAGAGCTGATCAATACCAAAAAGTACTAACCTGCCTTAGTTATAGTCCACAAACTCTCTATTTCAGTTGTATTCACAATATCTACAGAAATTCACAACTTAATACTATTATTTTAGGGAATAATTAGAGTATTTGCCCTTAGTTTAAACATTTTATTAATTTGTCTATTTGTTTGTCTACTGGTTTCTACCCATCAACATTTGTTATGACACTGTATAGGCTATATCATATATAACATGTATATGTCTTATATTGTATGTGTTAATTAGCATAAATATATTTACTATGTACGTCTTCATATACAAATATATTCCTTATATATATATGATTTTACGATGATTAGGTGTCCTTTCTGTAGTTATCAACCTGCTAGAATGAAAATCCTCAGCTTCAACAGAGCTTTATACTACACAGTATCTTAGTGAGCAACTGAAACACTGAGACAAGACTAAGCCTTAGATTTCAATATGATAAATATCCTTACTGAAGGTTGCAGACTTCCACACGTACAGACTGTCATGCATATGTTTGATACATTGTACATGGTTTTTGTTTTTAACACATTCTATCCAATCGAAAGGCGTTTCTCCTTTGAACGTAGTCTTGTTTTGAGAGATGGTTGAGAACATACTGCCTGTTGGGTTCAGGGCAAGTCATCTGTGTAACAGTCACAGAACACTCTGGAAACACATGGGAAAAGTCCAGCGCAACAACATTACTTTCACCCACAAGCTGTATGACTTGAGCACAACATATTTTAGCATAACATCTGCCTCTCCTTCACCCCTGCTTTAtgtatgtggatgtgtaaaacagtTGAACAACGTTTCGAATGATTTGTAGCCTGCAGTGTGGTATGTTGAACAAAACATGCGTTTTCCTATCCACAGTCAACCCTTGTTATGCAAATCATAAGTTACACAAAATTCAACCAAAATCTATAAAATGGGAATGAGACAACACGGGAAATGATCATATTCAAAAATAAGTAGCCTTTTCTAAATCAGACCTCAAACGTGTATCACAATCTCATGAAGAAATGAACACAAGGGTCAAAGCTTTCATCAGAAAACATCCGTTAACCTTGTACTGCAGTGggctgaatcagggtcacacagagtgtttctgggTAGTCTTAAAcacatctactttgaaacaagagtatacacctcacacacatgattATGGGCTTAACAAAAagaggacacctgtaccatgtcagatacagAGTTGAAATATATTCAATTttaagtttgcatcccaatatgacttTTTATATACattacagaagactgaaatataacaacactGTTTGACTTAGAAACACTGGATCAGGTTTATTGAAATAATGTTAATTGATTATGATATTATGACAAATATTAATaacacccatgaggccactaggtcatttgactgcaggaaagggctaccgACTAAAGTCCAGAATATTTACTATAGATAGAACATGGTTGACAAAATTAACAGATGAAAGTGTTACTATATAAATGTTGTCTATATTAGCTATATTAGAAGTCAGTCTGAGCTGATGATGTGTCAGAATACTATGCAAGCTATAAATCAAAATAATAATTCATTAAACTTCTATAGTGCTTTTCATAGAATCTCAAAGCACTTTAACAGCAAACAAAAAACTAATTCACAATATATCATGACAGGTCAATGAGCTACTGTATGTGGCTCACTGAGGCTGACCCCTGTAAGCAATACATGAGAATGTACATAGAGAATATTTTATAACGCTGCATCAGTCACATTATGATTACATTTCATCCAGTGGTAGTGACTCACTATTCTCTGCAGCTTCCCCTCTACCTTACATAGGCCTGAAGCATGATATGTGTTTGGAGAATTCACCTCGCTGACCATGTCCCCTAGGGACCGTGGGCTGTAGgtggaaggagagaagggggagccgCCACACAGACCTAAACCATATAGTCCCcatatgtatctgtgtgtgtgtatgtactatatgtatgtatctgtgtgtgtgtatgttctgtatgtatgtgtttgtgtgtgtgtgtatgtactgtatgtatgtatgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtactgtatgtatgtgtttgtgtgtgtatgtactgtatgtatgtgtttgtgtgtgagaaaaGCTTTATTTTGATGATGTGAGTATTCAAAAAGGCACACTGCTTCTTTCTCTTTAAACATACTCAGCCTGTTAAAACAATAGGAGTCTCTGGACTGGAAAATACACAGGCAGGCCCGATAGGACACAAAAGCAATTCCAAATGATATTGCGTTGGGTCTGTTGAGATTCAGTGCTAGCAGAAGGGCAGACACTGAGGATTATTAATGATGTCCCTATGGAACTCTACATGCTGCCCCTGGCTATAAGAGCTCGCTATAGCGACAAGCAGCCAATGGCTCTCCTTGCTGCATCCTGACGCAATTCAGAGTgaatggtgtgagtgtgtgtgtgtgtgagagtgtgtgtttacACACAGTGATTTACCAGGACCCGATCCTCTGTAATGAGCTACCATGAAGGATTCAAACACATGCTCCTCTTTATCATGTCAAGAGAAAAGAAAACACCATCCGGCTATTCTTTCAAACAAACTAATAAGCAGGTAACAACAAATTTACATTTATATTTCAACTATGTACATACAAATCTACGAGAATGTTTGTCTGCGACCTATTGAGACTTGCAAATATCAAAATGAAGTCCAAAACAACGATACAATAACATGTCGTGGATCTCTCGGCCTCTTGCAATCTCAGCCTAATATTCAGTCGTGGTGAGTTTAATTGTGGGTGGTGGACTTGGGAGGCGGCTTGCTGTTGATGTACGTGGCCCAATAGACCAGGTTGAAGATGAAGAACAGCACAGGGAAGATGATGCGTGAGATCTTGTCCACTCTGCTGACACGGTTGTAGGACTTTATGGCTTCCACGTAATTGTCATCCATTTTAGGAACCTTgtggctgtggtggtggtggtggtggtgttggtggtgtgtaGCTGTAGTGGCACTCCTGGAGACGGTGGTTAAACCTGGGTCCTTTGCCTCGTTGAGGGTGTATGTAGTTCCAACAATGTTGAATGTGTTATTGGCCTTTTTGGAAAGAGAGGCAGATTCTCT

Function

NR:

description
gamma-aminobutyric acid receptor subunit alpha-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2483176 True 5314 lncRNA 0.39 2 28973634 28978973

Neighbor

gene id symbol gene type direction distance location
LOC110509937 LOC106563397 coding downstream 229609 28698895 ~ 28744025 (-)
LOC110509936 LOC106563400 coding downstream 286141 28683308 ~ 28687493 (-)
LOC110509934 LOC106563394 coding downstream 323901 28633897 ~ 28649733 (-)
LOC110509932 LOC106563391 coding downstream 367429 28592328 ~ 28606205 (-)
trnal-uag-55 NA coding downstream 381551 28592002 ~ 28592083 (-)
LOC110509941 brcc3 coding upstream 71796 29050769 ~ 29098148 (-)
LOC110509943 fundc2 coding upstream 123095 29102068 ~ 29110664 (-)
LOC118945312 NA coding upstream 134795 29113768 ~ 29124286 (-)
LOC110509945 LOC106563512 coding upstream 198422 29177395 ~ 29273565 (-)
kif4 LOC106563510 coding upstream 235886 29214859 ~ 29235365 (-)
G2172412 NA non-coding downstream 154688 28818384 ~ 28818946 (-)
G2172407 NA non-coding downstream 157420 28815839 ~ 28816214 (-)
G2172402 NA non-coding downstream 161936 28811489 ~ 28811698 (-)
G2172397 NA non-coding downstream 163518 28809898 ~ 28810116 (-)
G2172377 NA non-coding downstream 175988 28797441 ~ 28797646 (-)
G2172876 NA non-coding upstream 191194 29170167 ~ 29173584 (-)
G2172881 NA non-coding upstream 196456 29175429 ~ 29175653 (-)
G2173149 NA non-coding upstream 267997 29246970 ~ 29274110 (-)
G2173139 dipa non-coding upstream 300399 29279372 ~ 29280854 (-)
G2172414 NA other downstream 153125 28819750 ~ 28820509 (-)
LOC110509931 mpp1 other downstream 396669 28561162 ~ 28576997 (-)
LOC110509923 LOC105024622 other downstream 710845 28256809 ~ 28265547 (-)
G2171619 NA other downstream 1036821 27935454 ~ 27936813 (-)
G2171531 NA other downstream 1212932 27757983 ~ 27760702 (-)
G2173258 LOC106563498 other upstream 445750 29424723 ~ 29427867 (-)
G2174066 NA other upstream 965492 29944465 ~ 29945418 (-)
G2174100 NA other upstream 996390 29975363 ~ 29977567 (-)
LOC110510010 requ other upstream 1320642 30299615 ~ 30312873 (-)
G2174463 NA other upstream 1693617 30672590 ~ 30673101 (-)

Expression


Co-expression Network