G2172876


Basic Information

Item Value
gene id G2172876
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29170167 ~ 29173584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2483390
AAAAGTAAACCATATCACTTTTTTTATTTACATGTGTACTTGTTAAGTAACACAAATATCCCTCATTACAAAACGGGAGCGATCCACTGATCGAAGTGAATAGGAAATGCTACTTAAAACCTCTTCAATGGGCTGTAATACTTCCCTTATAACAGGGGTTCCCAGTTACTGTCCCAACGTAGAGCTATGCAGGTCATCAATAAACAGATGCACTATGTGATCATGTATATAGAACATATATATTGGGCTACATGATATGGACTGAAATTGGGATGGCCTTTAAATAACACTCAGAATGTAGACTGAAGTGTAAAGTAAAGAACAGGCCCGGTTCACAATCTCATGTGGTAGAGAATAATCAACATTGTTTAATCTGCAACCTTGATAGTTGTGCCCCACTGAATATGGcccatgatttaaaaaaaatatatttaatgaaTCATCTCTGAAGGCCATCTCTTCCTCTAAGATCCCTGTATCTCTCAACAGGCACAGGACATTGTTCCTCTCACCCTTTCGACAACCGTGCTGCACCAAAATACCTACATCGAGATACTTTCCTGTCATTTCCCCTCCATAATAATCTGATAGGACAGAAAACAGTCTTTGTCTCTGAAATTTCTTTCACCTCTGCAGAACACGTGAGGAACAGGTTTGTCCATGTAAGTCATTGAAGAGGCTGTGAGCGAGGCGATCTGATCACAGACATCATGACAGGGAAAGCTGCTTCACAACAGTTACTCTTCAAACAATCATAAAGTGATGGTTTTTTACAATGGATTAAACATGTCACAGATAAAATGTTACAAACACAAAATGTCAACTTGACCCATATCCAGGCCAACTGGCATGGCAAACCCAAATGAAGAGTTTAAAGTGTACAATAACAATGACAGTTCAGTGACATCTAAGAGAGCACTAAAAGGTTTTACTGAACTGAACTGCAAAAGGTAACTTTAGAAATAAAAAGTATCTCGTATTCAGAAAATCGgactaaaacaaaaacaaaggcaAATTTAATCTGTCCAGCACCACATCAAGAACTACCAAACTCCAGAAGTATTTCCCATTGTGCGCATAGGCGCCTGAGCAATGGGGAAAATGGAGCAGCTACAACCCCACTTTCAAAATAGAGGTGCAAACATCGGTTTTAAACCCCCACTTTTTTACCAGAAAATTATCATCTTTTGGATAATTTTAAATGATTAGTAATGTTTGTATTAAAATGTATATGTCCATTTGAGAAATAATCAGAAGGCCTAATATTACATGCTTACATCTGTGAAATATTCCCCAAGCTGTTTACAGGCATTTAACGCCATTCTGCATTTTTGCCATCTATTTTCCCCAACTTCAAATCAATTAAATCACATTTGTTACTTAATGAAAAAAATGGAACAAAGTAACAGTTCTGGCTGAGCCCCATATGCCAGCTTCACGGTTCTAATGTAGCCAAGTGGTGTCTGTATGCGACTATGTTCTAAATAAAAAAGCACAGGGTATTTAGATCTCCGTAAAACAGCTCTGCTTGCGGACCCGGCTCCACAAGGGGGCTTAGCCCCCTCAGTTAAAACGTGTGCCACTTCAGTTTTACGTCTCTATATAAAAACAGCAAAAAAGTTCAAATTATCGAGTGACAGGTTGGCGCAAAATCAGTATCTGCACACCtaagagtgtgtgtatatgtgtagggGGGCTATGGAAAGCTACTGGGCGGTTAAGTATGACTCCTTTGGGTTTGGTTTCCATAAAAAGCGTGGGGAAAATGCTGCTCATCTGTGGTAAGCTATGTGAATAATGTGATACGCCTCTGCCTTGTAATAGGctcatttgattttgatttataaGGGCAGGTCAAGTTCAGTTAAATCCCCACCACTACAGAGTTTAGTTAGCTTCTTAGCTAGCTGTAAAGGGTGTTAGTGTTATTAGCCTATTTTGCTCTAACCAGCTAATCTGCCACGATGGATATCAGAAACGAAACCGCCGCCAAGCCCAGCAGCGATGATGCTGCCGAGCTCCAGCTAGCTCAGCGTGAAGCGCCTACTCACTCTTCCACAAGTGCCACAAGCATAATGTCTCCACAGACCCCTCCACCTGTTCCTGATGATCTTGGAACAAAGAAGCCAGCCCAGGTTAGCAAAGAATTCTACCCCAGCTGCAGGTTTTCTGGGCCTTATTCCAAGGCGGGTATTCTAACTGGAAGCATGCTATTGATAGAATAAAAGGATTCACTAGGAACGCATAAAGCATTTGAAATGCACTGCGGAAAGAAAACAAAGTTAAGTGCTATGGGAACTGAGGTGTCAACACTTGTTAATGATAGGCAACTGGCACAAACTCCTTTTCCACTTTGACAAATGTGTTTAGTCAGCAGACGAAGCATGCTACACCCAAGGAAAGCTCAACTAATCCAACTGGCATTTGTGTGGGATCTTACAAGAAGATTTCAGGGAGAATGGAATGATTGATTACTCAGGAAGTTCCACAGAGCATCAAGGAGGCTGCAACTCTGAAAAGGTAAGAAACAATCTAGCTGGTTGTTTTTTTTATCATAATCTTGGTAGTATAGCCAGTGACATCCTTTTCAGCAACAACCTAGAGTATGAATGGCAAATATATTTGCATTGCCAAAAAGGGCTTGCTTAGTGTGTAGGGTGCTGTACATGGTGCTGATAGAGCACTCAATGGTCTCGGCCTTTGAACTTTTACATTTATTGTGATAAGCAGAATTCATTATAATTCTAATGGATGGACCCAAATGATAGCTACATATCGATACATTTCACCATAGAAATAGAACGTAGGTTTTCATGTTTTTAAAATGGAACTGAAATGGAAACGTATTTATGGTAGGCCGGCATTGCTTAATTGATTACAGGgggaggaacagggttggagagccctgctgtagGATGTGGTTATTTGCATTCTCCTTTCATTTACTGTTAATGTAACTAGCCTAGATTCTGTCATGCCTTTATCAATCCGCTTTTGTTTATAGGCCTATAGTAGACCTAActctgttttgttctgttcaCATTCATTTGTTCACATTCGCTGTGTCGTTTTTCTAAGCCAAACTGCTATTCAGTATTTTTGTTTGCATGATTAACTAGTCTACTACTTTCAGCATTTAGTTTGCATTATTTTGGTAAGACGGCTGTGTGTACGCCTGCATTCACATTAGGCAATTCACCTATTATAAAAAGCCTATATTGTAACCTATATTCATTACCAAAATGGCCTTGTGTAGGGCgctgtccattgtgctgatacAGCACAGTGGAGCTGGGCTACAGATTTCACGTTAATCTGTCACTTCAAAAAGAACTCAC

Function

NR:

description
transient receptor potential cation channel subfamily M member 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2483390 True 3338 lncRNA 0.40 2 29170167 29173584

Neighbor

gene id symbol gene type direction distance location
LOC118945312 NA coding downstream 45881 29113768 ~ 29124286 (-)
LOC110509943 fundc2 coding downstream 59503 29102068 ~ 29110664 (-)
LOC110509941 brcc3 coding downstream 72019 29050769 ~ 29098148 (-)
LOC110509937 LOC106563397 coding downstream 426142 28698895 ~ 28744025 (-)
LOC110509936 LOC106563400 coding downstream 482674 28683308 ~ 28687493 (-)
LOC110509945 LOC106563512 coding upstream 3811 29177395 ~ 29273565 (-)
kif4 LOC106563510 coding upstream 41275 29214859 ~ 29235365 (-)
mrps12 LOC106563509 coding upstream 61919 29235503 ~ 29237152 (-)
LOC118945364 NA coding upstream 65344 29238928 ~ 29239768 (-)
LOC110509949 LOC106563543 coding upstream 73604 29247188 ~ 29251878 (-)
G2172679 LOC106563399 non-coding downstream 191194 28973634 ~ 28978973 (-)
G2172412 NA non-coding downstream 351221 28818384 ~ 28818946 (-)
G2172407 NA non-coding downstream 353953 28815839 ~ 28816214 (-)
G2172402 NA non-coding downstream 358469 28811489 ~ 28811698 (-)
G2172397 NA non-coding downstream 360051 28809898 ~ 28810116 (-)
G2172881 NA non-coding upstream 1845 29175429 ~ 29175653 (-)
G2173149 NA non-coding upstream 73386 29246970 ~ 29274110 (-)
G2173139 dipa non-coding upstream 105788 29279372 ~ 29280854 (-)
G2173133 LOC106563505 non-coding upstream 112518 29286102 ~ 29290865 (-)
G2172414 NA other downstream 349658 28819750 ~ 28820509 (-)
LOC110509931 mpp1 other downstream 593202 28561162 ~ 28576997 (-)
LOC110509923 LOC105024622 other downstream 907378 28256809 ~ 28265547 (-)
G2171619 NA other downstream 1233354 27935454 ~ 27936813 (-)
G2171531 NA other downstream 1409465 27757983 ~ 27760702 (-)
G2173258 LOC106563498 other upstream 251139 29424723 ~ 29427867 (-)
G2174066 NA other upstream 770881 29944465 ~ 29945418 (-)
G2174100 NA other upstream 801779 29975363 ~ 29977567 (-)
LOC110510010 requ other upstream 1126031 30299615 ~ 30312873 (-)
G2174463 NA other upstream 1499006 30672590 ~ 30673101 (-)

Expression


Co-expression Network