G2173570


Basic Information

Item Value
gene id G2173570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29877775 ~ 29878698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2484195
aaatgcatgctcttcaaccgatcgctacctgcacctgcccgcctgtccaacatcactactctggacggctctgacttagaatacgtggacaactacaaatacttaggtgtctggttagactgtaaactctccttccagacccatatcaaacatcttcaatccaaagttaaatctagaattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatcctcgacttcagcgatgtaatttagaaaatagcctccaatagcctactcaacaaattggatgcagtctatcacagtgcaatccgttttgtcaccaaagccccatatactacccaccattgtgacctgtacgctctcgttggctggccctcacttcatactcgtcgccaaacccactggctacatgtcatctacaagaccctgctaggtaaagtccccccttatctcagctcgctggtcaccatagcatctcccacctgtaacacacgctccagcaggtatatctctctagtcacccccaaaatcaattatttctttggccgcctctccttccagttctctgctgccaatgactgtaacaaactacaaaaatctctgaaactggaaacacttatctccctcactagctttaagcaccaactgtcagagcagctcacatattattgcacctgtacatagcccatctataatttagcccaaacaactacctctttccctactgtatttatttatttattttgctcctttgcaccccattatttttatttctactttgcacattcttccactgcaaatctaccattccagtgttttacttgctatattgtatttactttgctaccatggcctttttttgcctttacctcccttatctcacctcatttgctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2484195 True 924 lncRNA 0.44 1 29877775 29878698

Neighbor

gene id symbol gene type direction distance location
LOC110509988 tmem261 coding upstream 3538 29869091 ~ 29874237 (+)
cnih2 LOC106563472 coding upstream 18333 29844220 ~ 29859442 (+)
LOC118945359 LOC106590264 coding upstream 52081 29822440 ~ 29825694 (+)
LOC110509406 NA coding upstream 137106 29739663 ~ 29740669 (+)
LOC110509974 nxf1 coding upstream 179836 29677784 ~ 29697939 (+)
znhit2 znhit2 coding downstream 7591 29886289 ~ 29888742 (+)
LOC110509993 slc25a45 coding downstream 36159 29914857 ~ 29925677 (+)
LOC110509996 LOC106563468 coding downstream 61609 29940307 ~ 29940985 (+)
LOC110509998 LOC106563463 coding downstream 73794 29952492 ~ 29956193 (+)
LOC110509374 LOC106563556 coding downstream 94868 29973566 ~ 29977591 (+)
G2173558 NA non-coding upstream 38404 29839106 ~ 29839371 (+)
G2173555 NA non-coding upstream 41274 29836141 ~ 29836501 (+)
G2173554 NA non-coding upstream 41693 29831894 ~ 29836082 (+)
G2173548 NA non-coding upstream 48724 29828811 ~ 29829051 (+)
G2173580 NA non-coding downstream 510 29879208 ~ 29879475 (+)
G2173581 NA non-coding downstream 1254 29879952 ~ 29880235 (+)
G2173553 NA non-coding downstream 13289 29891987 ~ 29892424 (+)
G2173603 NA non-coding downstream 90486 29969184 ~ 29970572 (+)
G2173614 NA non-coding downstream 104626 29983324 ~ 29995153 (+)
LOC110509970 LOC106563483 other upstream 215541 29652518 ~ 29662236 (+)
G2173114 NA other upstream 290303 29585594 ~ 29587472 (+)
G2173098 NA other upstream 317816 29559570 ~ 29559959 (+)
LOC110509373 LOC106563396 other upstream 1198098 28678848 ~ 28681351 (+)
G2173551 vps51 other downstream 15396 29894094 ~ 29896279 (+)
G2173675 NA other downstream 258025 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 440950 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 458154 30336852 ~ 30355090 (+)

Expression


Co-expression Network