G2173622


Basic Information

Item Value
gene id G2173622
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30013013 ~ 30054351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2484255
agtggcccaaggcagctgccctgcggtattccacagtttaacacattaggggaagaaaatgaaccattgatataggtggactgtttcctgtcagttagatatgactgtacccaattcaatgctacctccttaaaaccataatgcattaattttgtcaaaataatttcatgatccactaaatcaaatgctgcactgaaatctaaaaataCCATCAATCACACTCCTTCTTTCCTTCGCTAAATGGACTATACTAGAATGGGGCTGGAGGCACGCAGGAATGAATCGCTTTGGGAATGGGTCTTGATTTTTCATGCAAATGTACCTTTCTTAACTCTCCGACTCAGAATATAAATTCCTCCCATTTTAGCTGTGTTATTATGGCTGAGTTTTCCTGGTGTCATTTGGGTCTTTTAGAGAATCCTGTTTTTTTCTATTTATACAGAGAGTGGAAC

Function

NR:

description
PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2484255 True 452 lncRNA 0.39 2 30013013 30054351

Neighbor

gene id symbol gene type direction distance location
LOC110509999 LOC106563461 coding upstream 5552 29978474 ~ 30007461 (+)
LOC110509374 LOC106563556 coding upstream 35422 29973566 ~ 29977591 (+)
LOC110509998 LOC106563463 coding upstream 56820 29952492 ~ 29956193 (+)
LOC110509996 LOC106563468 coding upstream 72028 29940307 ~ 29940985 (+)
LOC110509993 slc25a45 coding upstream 87336 29914857 ~ 29925677 (+)
LOC110510005 LOC106563457 coding downstream 66166 30120517 ~ 30127527 (+)
LOC110510002 LOC106563456 coding downstream 75167 30129518 ~ 30135940 (+)
LOC110510004 LOC106563454 coding downstream 84992 30139343 ~ 30147325 (+)
zmp:0000001168 LOC106563451 coding downstream 121153 30175504 ~ 30222113 (+)
LOC110510009 LOC106563450 coding downstream 210639 30264990 ~ 30291203 (+)
G2173621 NA non-coding upstream 1537 30011250 ~ 30011476 (+)
G2173611 NA non-coding upstream 12452 29999760 ~ 30000561 (+)
G2173614 NA non-coding upstream 17860 29983324 ~ 29995153 (+)
G2173603 NA non-coding upstream 42441 29969184 ~ 29970572 (+)
G2173664 NA non-coding downstream 37482 30091833 ~ 30092038 (+)
G2173683 NA non-coding downstream 61380 30115731 ~ 30115984 (+)
G2173677 NA non-coding downstream 63695 30118046 ~ 30118555 (+)
G2173685 NA non-coding downstream 65667 30120018 ~ 30120355 (+)
G2173674 NA non-coding downstream 74137 30128488 ~ 30128781 (+)
G2173551 vps51 other upstream 116734 29894094 ~ 29896279 (+)
LOC110509988 tmem261 other upstream 141696 29869091 ~ 29874237 (+)
LOC110509970 LOC106563483 other upstream 350779 29652518 ~ 29662236 (+)
G2173114 NA other upstream 425541 29585594 ~ 29587472 (+)
G2173675 NA other downstream 82372 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 265297 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 282501 30336852 ~ 30355090 (+)
G2173841 LOC106563447 other downstream 409591 30463942 ~ 30468124 (+)
LOC110510022 LOC106563433 other downstream 768263 30817845 ~ 30824144 (+)

Expression


Co-expression Network