G2173761 (LOC106563448)


Basic Information

Item Value
gene id G2173761
gene name LOC106563448
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30336852 ~ 30355090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2484421
TTTCCTTTAAACCATGTTTTATTGTTCCTAATATTAGATGTAGATACACAAGTCAACAAACATTATTTTCGATCTGTAATGAAAATGCTCCACAGCACACTGACATCTTGTGGAAGGGTCTGGTATTACAGACACGTACCTGAAAATGGACAGCAGTTATAGTTGTAGTAACAAATATGTTGCAGTAGTAagagtagtagtaacagtagcaataataataattaatcatAGTAGTGGTATTCACAACTCGCAATTAGTTAAGTCACAGAAGAAGGAAATGACATTATAAAAAAAAGGGAAATGGCAGTGGGTGGAAAGGTTTATCAAATGCTGCAAAACAGATCAGACCACTGGATGAGAAAATACAAGAACCCCGTGAGACCGCACATCTCCTGTCTAACTCTAGAAAATGGAAGCTCAAATTTGCCATcagtcctctggttaatatataCGGTGTTTCTTTTTCTCTTCAAATAAGAGACCAAGAAACCTTTTTAGGTGTTCCACTAACTTTTTAAACCAAAATGCTCAAAACCCTCTTAGGCTCTCTTTAACCATCAATAATACAGTCTATCCTTTTACGCTCAACACTCACCAGTAGCACACAGACTGCACAACATCAACCCAAATCTGGCACCAAATCACAATCAGCTCCACATCTTTCTGCTTGACTGGAAGGCCAGGGTCATTCCACCTTGGTATATCTGTGTGTGGatatgtgtgagagtgtgagagagtgtaagagagagaggagaaagcaagagagaggtaGTGTGTCTCCAAGTATGTCCATCACATGACCAATTTGTCCAACCCATCTTAAAAGCCATTAACATTAATAAGAATTCATAGTAGAATGGGCCTGAGGAACTTGCTCATGTCTGTGTATAACCTGCCTGGGACTTGAACTGGGTCACTGTGGGAGCAGTTCAGCCAGTAGGGGGCAACACAAGCTACTTTTAGAAGTGCTATGGCCGATCTGGCACCAACTGCCCGATAGTCGTTTTTCACAGTGAATACCACAGAGCGAGGCTCACTCAGCTCTACTCTTGAGCATCGCAGACTTTGTTGTCTCATTTAACAGGTCAGTGGGGTTCGAACTGTGACTAGGGAGCCGAGGGTCAGCTCAGTACATTAGGCTGAGATCAAGATCTTAGGCTCACAGCTGGGATACAAACCAAGGCAGACCAAGTAGTCTACAGCCTCTTGTATGGCTCTACTGCTGCTTATTTACCCCAAATCATATGAACTGAAATGGCAATAGTCCAATAGTCTTGCCTGTTGAAAAGCTGCACATTTCTGACATGTATTCACTGTGGTTCTTTCCCTCTCTGGTTTAGGGTGAGCCATCTCAGTCAAACAATAACCTAACTGGgctttgatatgccacaccctTGCCCCAGATAAGCCTACCACCGAGTAACAGATACCATTGGCTACAAGAAATGTGGATTTTTCTGTGCTTTGAGCAGTTTCTTGTACAGAAACCTTCCACTCATCTCAGACACTAAAATAAATCACTCACTGTGCCAGGACCCGACGTCGCTATCAATGTCCTCTTTACTTTACTATTATTTGATAGAATTTAATCATTTTCTTTTTGCCCAATGTGAATTCTTTCCAAACTGCTGGAGGGGTACTAATGATACACCTGGGCATTCTGGTGTAATACACCACCTTCCACAGCATGGGCTTCATGGTATCATGCCATGCTGTACATCGCTTACGGGTGAATCTCATGTACCAATAACATCAAAGTAGAAGAGAATTGGCAACAACAACGAGACACATACAAGTACAATCCTATAATGAAGTCATGCCACATATGGAGGAGCTCAAAGCCCTCCAGAAAAACAATTTAAGACTATTCTCTCGGTCACCATCAAGTGAGGAAAGCGCTCCATGGTTACGCCTCTTCCAATCCAACACAGCTATGCTAGCATTTCACTTGCTTCAACCGCTGATTCGGGTGAGCCTGTCCATATACGCTCAATGGAACCTGGGTACAGAATCCATATACATACACGGAGTCAATGCCAAGGGGCACATATTAAACATTCTTCTGAGATTTGTTTTGTGATCGATAAAGCCTCCTTTGTGATTAAGCACTATTCAAATAGAAGGAATCTCAGCCCTCAGCGTCCAACCCTACCCCATCTGAAATGAACCCTCCTCTTCCTACTAGACAACCTCCGCAACCCTATGCCACATTGATGTGCTTCTGCTTACAATCCTCACTAGTGTTTGGCAATGGCAGTGGTAACCAACAGTGTTAACCTGCCCCAGCCATCCCATTACAAAACAACAGAGGGATCAGGAGGAAGTATGTGAAGTCTGAAAATCATCTAGGAGGAATGTTTCATTAATTAGCATTGTCATCTACATATTCaaaccaaaaaaacaaacaagaatcctTAAAGAAAGCCATCCCAACAACTTctttgagcgtgtgtgtgtatatatggtgtgtgtgtatgttaagtCAGAAAAGCAGCATCCAACTGGACGCTTCGGAtttagaataacaaaaaaaaaaaacacatgcaaAACCCATATCACCATAACTCCCACTCTCACCCTTACTAGAAAACAAACTCTCTGGTTTGAATAGAAACAACACAATTCAAAATCAGAAATAATCCCTCAGAAGAACAAAATCAAATACAGGCAAGATCCAAGTTAAAATAAAACCactttaaatatatataatttccCACTGGTGAAAATCACTTACTGCACACTGCTAAAAGTTACCGAGCTTCATTTTTTTAAACACCTCAATAACGGTCTTTCCTCAACAAAAGAAACAAGACCAACATGGTCCCGTAGATCAAACTCTTGTTTTGCTCTGCAACATGACTCAAGAAATCTACTGACATACtctttcaattatttattttaattttcccCCTCAAAACCTGCAACAGCAAaaagataaataataataacaccaATACCAAAAAAATAAAAGATATGGGGCTTCCCAAGGAGCACGATAGAGAAAAGGAGACTGGAAGAGGGGACCTGGGGACAGCACTCTTTACAACAGTTTCTCTGTTATTGGTAAAACAGCATTAAAGTATTTTGCTTGTCTAAAGATTGGTTGAGCCAGGACTAATTTAAACCAACAAATGATCCAGTGTGGGTGAATGAAAGAGAATTTACTTTGAGGGTCCTCTTAGCCTCTCGGTTCTAATGCTAACTaccccctgccctctcctctcccaacaaACCCCTTGGTTTCCCCCGATGATGAGGCCAAAGAGAGTTCTTATTAGTGACTCTGATCAACAAACCCTGCGTATCGGCTGAAAATGCAACTAAAGCTATGGACAAGGGCTTACATTGGTAGGATGAAGCCAAAtgtgagagatggagaaggaaagagagatatAAAAGAGAAAGAGATGACAAATgaaaacagaaaggagagagcgagaaagagcaaGCTCTGTGTGAGCCAGAAATTAGACAAACCCCTCAGGACCCCGGCCGACAGCGATGTGTTTATGCGACAAGAGTGCTTTCATTTCTGCCCGTTTCAGTTTGTTGGAATTTTGAGGAATATAATTTTCCTTGATGTTGTTgttttacaaatgttttatttcttctttCCAAAGAAGCTGAACCTCTTCTCacggtccctctccttgccctCCTTGTTGCGCATGGTGACTCCGGCAGCGTCTGCTGAGCTGGGGGAGATGGGGGGCATAGTCATGGCTCGGTTCAGGGCCCTGGGGCCTCTGGGGGAGTGGTCTCCTGACCCCCCTGCTGGGATGGAGCTATGAATGGAGTGGATCCACGAGGCCATCTCCG
>TU2484422
TTTCCTTTAAACCATGTTTTATTGTTCCTAATATTAGATGTAGATACACAAGTCAACAAACATTATTTTCGATCTGTAATGAAAATGCTCCACAGCACACTGACATCTTGTGGAAGGGTCTGGTATTACAGACACGTACCTGAAAATGGACAGCAGTTATAGTTGTAGTAACAAATATGTTGCAGTAGTAagagtagtagtaacagtagcaataataataattaatcatAGTAGTGGTATTCACAACTCGCAATTAGTTAAGTCACAGAAGAAGGAAATGACATTATAAAAAAAAGGGAAATGGCAGTGGGTGGAAAGGTTTATCAAATGCTGCAAAACAGATCAGACCACTGGATGAGAAAATACAAGAACCCCGTGAGACCGCACATCTCCTGTCTAACTCTAGAAAATGGAAGCTCAAATTTGCCATcagtcctctggttaatatataCGGTGTTTCTTTTTCTCTTCAAATAAGAGACCAAGAAACCTTTTTAGGTGTTCCACTAACTTTTTAAACCAAAATGCTCAAAACCCTCTTAGGCTCTCTTTAACCATCAATAATACAGTCTATCCTTTTACGCTCAACACTCACCAGTAGCACACAGACTGCACAACATCAACCCAAATCTGGCACCAAATCACAATCAGCTCCACATCTTTCTGCTTGACTGGAAGGCCAGGGTCATTCCACCTTGGTATATCTGTGTGTGGatatgtgtgagagtgtgagagagtgtaagagagagaggagaaagcaagagagaggtaGTGTGTCTCCAAGTATGTCCATCACATGACCAATTTGTCCAACCCATCTTAAAAGCCATTAACATTAATAAGAATTCATAGTAGAATGGGCCTGAGGAACTTGCTCATGTCTGTGTATAACCTGCCTGGGACTTGAACTGGGTCACTGTGGGAGCAGTTCAGCCAGTAGGGGGCAACACAAGCTACTTTTAGAAGTGCTATGGCCGATCTGGCACCAACTGCCCGATAGTCGTTTTTCACAGTGAATACCACAGAGCGAGGCTCACTCAGCTCTACTCTTGAGCATCGCAGACTTTGTTGTCTCATTTAACAGGTCAGTGGGGTTCGAACTGTGACTAGGGAGCCGAGGGTCAGCTCAGTACATTAGGCTGAGATCAAGATCTTAGGCTCACAGCTGGGATACAAACCAAGGCAGACCAAGTAGTCTACAGCCTCTTGTATGGCTCTACTGCTGCTTATTTACCCCAAATCATATGAACTGAAATGGCAATAGTCCAATAGTCTTGCCTGTTGAAAAGCTGCACATTTCTGACATGTATTCACTGTGGTTCTTTCCCTCTCTGGTTTAGGGTGAGCCATCTCAGTCAAACAATAACCTAACTGGgctttgatatgccacaccctTGCCCCAGATAAGCCTACCACCGAGTAACAGATACCATTGGCTACAAGAAATGTGGATTTTTCTGTGCTTTGAGCAGTTTCTTGTACAGAAACCTTCCACTCATCTCAGACACTAAAATAAATCACTCACTGTGCCAGGACCCGACGTCGCTATCAATGTCCTCTTTACTTTACTATTATTTGATAGAATTTAATCATTTTCTTTTTGCCCAATGTGAATTCTTTCCAAACTGCTGGAGGGGTACTAATGATACACCTGGGCATTCTGGTGTAATACACCACCTTCCACAGCATGGGCTTCATGGTATCATGCCATGCTGTACATCGCTTACGGGTGAATCTCATGTACCAATAACATCAAAGTAGAAGAGAATTGGCAACAACAACGAGACACATACAAGTACAATCCTATAATGAAGTCATGCCACATATGGAGGAGCTCAAAGCCCTCCAGAAAAACAATTTAAGACTATTCTCTCGGTCACCATCAAGTGAGGAAAGCGCTCCATGGTTACGCCTCTTCCAATCCAACACAGCTATGCTAGCATTTCACTTGCTTCAACCGCTGATTCGGGTGAGCCTGTCCATATACGCTCAATGGAACCTGGGTACAGAATCCATATACATACACGGAGTCAATGCCAAGGGGCACATATTAAACATTCTTCTGAGATTTGTTTTGTGATCGATAAAGCCTCCTTTGTGATTAAGCACTATTCAAATAGAAGGAATCTCAGCCCTCAGCGTCCAACCCTACCCCATCTGAAATGAACCCTCCTCTTCCTACTAGACAACCTCCGCAACCCTATGCCACATTGATGTGCTTCTGCTTACAATCCTCACTAGTGTTTGGCAATGGCAGTGGTAACCAACAGTGTTAACCTGCCCCAGCCATCCCATTACAAAACAACAGAGGGATCAGGAGGAAGTATGTGAAGTCTGAAAATCATCTAGGAGGAATGTTTCATTAATTAGCATTGTCATCTACATATTCaaaccaaaaaaacaaacaagaatcctTAAAGAAAGCCATCCCAACAACTTctttgagcgtgtgtgtgtgtgtgtgtgtttgtttgtgggttACTAAGTAATTGAAGGTCAGTAAttgatgctctacagatggtcatactaacaaactatctgttgataagcaactgcttgctaaggttacagttaggtttagaataagggttaaggttagtgctggggttaggataaaggttaagttcagggttagggctagggttagtagatagttgaaATGTCACTGATAGTCTGCAGAGTAACTACAGTAGAAAATTGTTACTCACTGTGACATGTTCATAGTCCTGTCCCAGCTCATGGGATCCAGCCACCACCTCCCTCTCAGCGATCCACTGCTCCAGGTCGTCCACCTCTCTCTTCAGCTGGGTCAGCCTCAGCCTCTCCTGGAGACGCCCACGACGCTCCTCAGCCAGGTCTTTCAGCCCTGCGTACAGCTTGTCCACCTGGGCTTGCCGTAGGTTGATACGCTCGCTAATAGTAGTGGCGAATAAGAAAGAGTCAGGCCAGTTGTAATGAGAGACTCAGGTCAGTTGTAATGAGAGACTCAGGTCAGTTGTAATGAGAGAGTCAGGTCAGTTGTAATGAGAGAGTCAGGCCAGTTGTAATGAGAGAGTCAGGCCAGTTGTAATGAGAGAGTCAGGCCAGTTGTAATGAGAGAGTCAGG

Function

NR:

description
hypothetical protein cypCar_00048606, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2484421 False 3819 TUCP 0.42 2 30336852 30340691
TU2484422 True 3106 lncRNA 0.43 2 30336852 30355090

Neighbor

gene id symbol gene type direction distance location
LOC110510009 LOC106563450 coding upstream 45649 30264990 ~ 30291203 (+)
zmp:0000001168 LOC106563451 coding upstream 114740 30175504 ~ 30222113 (+)
LOC110510004 LOC106563454 coding upstream 189527 30139343 ~ 30147325 (+)
LOC110510002 LOC106563456 coding upstream 200912 30129518 ~ 30135940 (+)
LOC110510005 LOC106563457 coding upstream 209325 30120517 ~ 30127527 (+)
LOC110510020 LOC106563438 coding downstream 297602 30652692 ~ 30669474 (+)
LOC110509412 LOC106563437 coding downstream 336871 30691961 ~ 30780818 (+)
il13ra2b il13ra2b coding downstream 431654 30786744 ~ 30804819 (+)
LOC110510022 LOC106563433 coding downstream 462755 30817845 ~ 30824144 (+)
LOC110510024 LOC106563431 coding downstream 566398 30921488 ~ 31017638 (+)
G2173744 NA non-coding upstream 27117 30299613 ~ 30309735 (+)
G2173747 NA non-coding upstream 29845 30304213 ~ 30307007 (+)
G2173738 NA non-coding upstream 52166 30282006 ~ 30284686 (+)
G2173737 NA non-coding upstream 57200 30278618 ~ 30279652 (+)
G2173832 NA non-coding downstream 89532 30444622 ~ 30444904 (+)
G2173840 LOC106563447 non-coding downstream 103084 30458174 ~ 30463021 (+)
G2173843 LOC106563447 non-coding downstream 113238 30468328 ~ 30468909 (+)
G2173869 NA non-coding downstream 157000 30512090 ~ 30512374 (+)
G2173871 NA non-coding downstream 159001 30514091 ~ 30514328 (+)
G2173754 LOC106563449 other upstream 13237 30319648 ~ 30323615 (+)
G2173675 NA other upstream 199532 30136723 ~ 30137320 (+)
LOC110509998 LOC106563463 other upstream 383042 29952492 ~ 29956193 (+)
G2173551 vps51 other upstream 440573 29894094 ~ 29896279 (+)
LOC110509988 tmem261 other upstream 465535 29869091 ~ 29874237 (+)
G2173841 LOC106563447 other downstream 108852 30463942 ~ 30468124 (+)
G2174785 NA other downstream 962747 31317837 ~ 31318377 (+)
G2175233 psmb6 other downstream 1255454 31610544 ~ 31611469 (+)
LOC110509422 LOC106563560 other downstream 1545891 31820484 ~ 31908546 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031251 NA non-coding NC_007116.7 CM002889.2 37708702 ~ 37711850 (-)
eurasian perch (Perca fluviatilis) G167818 NA non-coding NC_053127.1 CM020924.1 22816749 ~ 22819328 (+)