G2175071


Basic Information

Item Value
gene id G2175071
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31398418 ~ 31403881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2485991
agccagtcagtccaccagccctatggatcagtcagtcagtcagtgagtcagtcagtccaccagccctatggaTCAGTCAATCAGTTagtccaccagccctatggatcagtcaatcagtcagtccaccagccctatggatcagtcagtcattcagtccaccagccctatggatcagtcaatcagtcagtgagtcagccagtccaccagccctatggatcattcagtcagtcagtgagtcagccaGTCCACCAGCAGTAcggctcagtcagtcagtgaaaTCAGTCCACCAGCCCTTTGGATCAGTCATTCAGTCAATGAGTCAGCCAGTCAGTGCACCAGCCCTATGGATCAGTCATTCAGCAAAATAGTCactcggtcagtcagtcagtccaccagccctatggctcagtgagtcagtcagtcagtccaccagccctatggctcagtgagtcagtcagtcagtccaccagccctatggatcagtcagtcagtcagtccaccagccctatggctcagtcagtcagtctgtccaccagccctatggctcagtgagtcagtcagtcagtcagtccaccagccctatggctcagtgagtcagtcagtcagtcagtcagtccaccagccctatggctcagtgagtcagtcagtcagtccaccagccctatggatcagtgagtcagtcagtcagtcagtcagtccaccagccctatggctcagccagtcagtcagtccaccagccctatggctcagtgagtcagtcagtcagtcagtccaccagccctatggctcagtcagtcagtcagtcagtccaccagccctatggatcagtcagtcagtcagtccaccagccctatggctcagccagtcagtcagtcagtccaccagccctatggctcagtgagtcagtcagtcagtccaccagccctatggctcagtgagtcagtcagtcagtcagtcagtccaccagccctatggatcagtcagtcagtcagtccaccagccctatggctcAGCGTCATCTCATTTTGAGGTCCTCAGAGTATGTTGATACATAGCAGAGGCTTTTCAAGCACCataatgtgattcacatttttcaAAACCTTGGTGCTCATTAATATTCAGGAACTGACATTGTTATGACCTTGTCCATTACGTCACCTGTTCCTAAAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106594931 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2485991 True 1170 lncRNA 0.53 3 31398418 31403881

Neighbor

gene id symbol gene type direction distance location
LOC118945323 NA coding downstream 94388 31297252 ~ 31304030 (-)
LOC110509415 LOC106563553 coding downstream 189897 31207464 ~ 31208521 (-)
LOC110509414 LOC106563553 coding downstream 193781 31203593 ~ 31204637 (-)
LOC110509413 LOC106563430 coding downstream 207292 31060271 ~ 31191126 (-)
LOC110510023 tmm47 coding downstream 534931 30845842 ~ 30863487 (-)
LOC118945266 NA coding upstream 154952 31558833 ~ 31560156 (-)
tnfsf13 tnfsf13 coding upstream 200213 31604094 ~ 31607229 (-)
LOC118945265 inca1 coding upstream 204379 31608260 ~ 31610410 (-)
LOC110510028 psmb6 coding upstream 206662 31610543 ~ 31613567 (-)
xrra1 xrra1 coding upstream 269466 31673347 ~ 31688712 (-)
G2175049 NA non-coding downstream 23756 31341175 ~ 31374662 (-)
G2175050 NA non-coding downstream 25420 31339554 ~ 31372998 (-)
G2175021 NA non-coding downstream 133048 31261189 ~ 31265370 (-)
G2175011 NA non-coding downstream 165876 31232339 ~ 31232542 (-)
G2174989 NA non-coding downstream 193103 31201618 ~ 31205315 (-)
G2175083 NA non-coding upstream 12708 31416589 ~ 31421766 (-)
G2175084 NA non-coding upstream 21013 31424894 ~ 31445815 (-)
G2175139 NA non-coding upstream 119644 31523525 ~ 31523741 (-)
G2175140 NA non-coding upstream 124684 31528565 ~ 31528767 (-)
G2175150 NA non-coding upstream 133526 31537407 ~ 31537629 (-)
G2174894 NA other downstream 391983 31003755 ~ 31006435 (-)
G2174463 NA other downstream 725317 30672590 ~ 30673101 (-)
LOC110510010 requ other downstream 1085637 30299615 ~ 30312873 (-)
G2174100 NA other downstream 1420851 29975363 ~ 29977567 (-)
G2174066 NA other downstream 1453000 29944465 ~ 29945418 (-)
G2175135 NA other upstream 116171 31520052 ~ 31521188 (-)
G2175418 LOC106563537 other upstream 198568 31602449 ~ 31688677 (-)
G2175420 NA other upstream 265453 31669334 ~ 31673189 (-)
G2175503 NA other upstream 318071 31721952 ~ 31726394 (-)
LOC110510037 LOC106563414 other upstream 322656 31726537 ~ 31731451 (-)

Expression


Co-expression Network