G2175418 (LOC106563537)


Basic Information

Item Value
gene id G2175418
gene name LOC106563537
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31602449 ~ 31688677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2486443
gaaTACATGGAATTGGTATGTGATGAATAAGTCCTGCACACAATGTGcttattttcttttcttttttttatcaggattaatatttgatttgatgtgtatgGAATTGTTTCCTGAAATATGCATGAAAGGACAGTAATTACCCAGAATTCTGCACCTTTGGATAGTTGTACTTCCAATTTTGATCATCATGATTTAGTGACTGCAAAGAATGTACTGGGATTTTTAAAAGACAGATTCACTTTTTGTTTTGTCTGCATGGACCCAAGAGATAAGTATGGTTTCATTAGTCTTTTTGTCTGCATGGACCCAAGAGATAAGTATGGTTTCATTAGTCTTTTTGTCTGCATGGACCCAAGAGATAAGTATGGTTGCATTAGTCTTTTTGTCTGCATGGACCCAAGAGATAAGTATGGTTTCATTAGTCTTTTTGTCTGCATGGACCCAAGAGATAAGTATGGTTGCATTAGTCTTTTTGTCTGCATGGACCCAAGAGATAAGTATGGTTGCATTAGTCTTTTTGTCTGCATGGACCCAAGAGATAAGTATGGTTGCATTAGACTTTTTGTCTGCATGGACCCAAGAGATAAGTATGGTTGCATTAGTCTTTTTGTCTGCATGGACCCAAGAGATAAGTATGgtccccccgt
>TU2486446
GAAGTTGTTCAGCGGTGGAGGAGGCCTGGACGAGATGGGTGAAACATGCTTGGATGAGAAGGAATTTGATGACTGGTTTATCGAGTCTTTGAAAATGTGTGCAGGGTCTTTGTGCAGTGCGAGATGTCAAAGTGGTCCTTGGAGGTTTCTCAGATGGCGCCGTTCATTGCCTTAAACACATTCCAGGAACAAGCTCCAAGCTCCTGGTGTGGGACTTAGGAGGAGGTGATTGTGAAACAGACAGTCCAGATGCACTGAGCTCCCTGCAGTTTGTGAGTGACACTGTATTTCTCGCTTGTGCCTGCAATGGTGACCTGTATGTGGGGGACACACGGAAGCCTTCAGCTCTTCAGCAAACCccaggtggagggagagagggagcccAATGGTGTATGGGTGTTTGACAGACCTGTTCTCATCAGACCCATCCTCCTGTAGTGTAGCACggctctcctcctcctgccaAGTGTTTGTGTCTGATCTTAGGGACCTAAGAGCCCCCTTGAGTAAAGCCCAGCTtgatgtccagaggaaaactaccgATAATGACTTCCTGAAGGTGACTTGGGCGCCAGCTTTAGACAACTGCCTTGCAGTTTCAGGTTTTGATGGAATGGTGCAAATCTACAACGCTGCCTCTTGGAGAGTTGGTGGAATTCCAGCCTATTTTTGTCCACCGTGGTCACATGATGACTGAGGATCAGTTTGACACTTCATCAGCTGTGGTCACAACTCATGTTTAGCATCCAAGTCGACCtaagactgtcctctctgctgctGTAGACGGGTCTGTGCATGTATGGGACTGGGTCGACAAAGCCACTGCCAGCTGTTGACATTCAAACAAACTTACAGTTCAATGTTAATCATTACGCAGCTTTGGACCTTGCCTGAAgtctaaatatttttttcattatgtAAATATGTAAGGAAAAAACATCCTCTGTAAAGCACAATTTATTGGGATGGGATAAGATGATGTAAAAATACACTGTTATGAGTAGTTATTCAATGCTATGAGTAGTTATTCAATGCTGTGAGTAGTTATTCAATGCTATGAGTAGTTGTTCCATGCTACTCATAGCTGTTCCATGCTATGAGTAGATGTTCCATACTAGGAGTAGTTGTTCCATGCTATGAGTAGTTATTACATACTAGGAGTAGTTATTACATACTATGAGTAGTTGTTCCATGCTATGAGTAGTTATTACATACTAGGAGTAGTTATTACATACTATGAGTAGTTGTTCCATGCTATGAGTAGTTATTACATACTATGAGTAGTTATTACATACTATGAGTAGTTGTTCCATGCTATGAGTAGTTATTACATACTATGAGTAGTTATTACATACTATGAGTAGTTATTACATACTATGAGTAGTTGTTCCATGCTATGAGTAGTTGTTCCATGCTATGAGTAGTTATTACATGCTATGAGTAGTTATTACATACTATGAGTAGTTATTACATACTATGAGTAGTTGTTCCATACTAGGAGTAGTTGTTCCATGCTATGAGTAGTTATTACATAATAGGAGTAGTTATTACATACTATGAGTAGTTGTTCCATGCTATGAGTAGTTATTACATACTATGAGTAGTTATTACATACTATGAGTAGTTGTTCCATGCTATGAGTAGTTGTTCCATGCTATGAGTAGTTGTTCCATGCTATGAGTAGTTATTACATACTATGAGTAGTTATTCTTAAACTGTACACAGCGTTGCATTATGGAAGAGGTATTCTGAGTTTATATTATTATACAAtacattcgaaaagt

Function

NR:

description
PREDICTED: WD repeat-containing protein 73

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2486443 False 647 TUCP 0.37 2 31602449 31687002
TU2486446 True 1784 lncRNA 0.41 5 31683649 31688677

Neighbor

gene id symbol gene type direction distance location
LOC110510028 psmb6 coding downstream 70082 31610543 ~ 31613567 (-)
LOC118945265 inca1 coding downstream 73239 31608260 ~ 31610410 (-)
tnfsf13 tnfsf13 coding downstream 76420 31604094 ~ 31607229 (-)
LOC118945266 NA coding downstream 123493 31558833 ~ 31560156 (-)
LOC118945323 NA coding downstream 379619 31297252 ~ 31304030 (-)
LOC110510037 LOC106563414 coding upstream 39126 31726537 ~ 31731451 (-)
LOC110509376 LOC107567170 coding upstream 48036 31736713 ~ 31738259 (-)
LOC110510038 sycn coding upstream 51225 31739902 ~ 31740562 (-)
selenow1 selenow coding upstream 59073 31747750 ~ 31750431 (-)
ehd2a LOC106563411 coding upstream 59073 31747750 ~ 31755799 (-)
G2175459 NA non-coding downstream 23960 31657109 ~ 31659689 (-)
G2175441 NA non-coding downstream 31450 31630753 ~ 31652199 (-)
G2175451 NA non-coding downstream 41512 31638999 ~ 31642137 (-)
G2175417 NA non-coding downstream 81260 31602171 ~ 31602389 (-)
G2175489 NA non-coding upstream 18364 31707041 ~ 31707373 (-)
G2175491 NA non-coding upstream 22132 31710809 ~ 31711045 (-)
G2175480 NA non-coding upstream 31821 31720498 ~ 31797706 (-)
G2175476 selenow non-coding upstream 59096 31747773 ~ 31750415 (-)
G2175512 NA non-coding upstream 73353 31762030 ~ 31762658 (-)
G2175420 NA other downstream 10460 31669334 ~ 31673189 (-)
G2175135 NA other downstream 162461 31520052 ~ 31521188 (-)
G2174894 NA other downstream 677214 31003755 ~ 31006435 (-)
G2174463 NA other downstream 1010548 30672590 ~ 30673101 (-)
LOC110510010 requ other downstream 1370868 30299615 ~ 30312873 (-)
G2175503 NA other upstream 33275 31721952 ~ 31726394 (-)
G2175969 LOC100194703 other upstream 574606 32263283 ~ 32266089 (-)
LOC110510065 LOC106603070 other upstream 596073 32282188 ~ 32287263 (-)
LOC110509415 LOC106563553 coding downstream 393928 31207464 ~ 31208521 (-)
LOC110509414 LOC106563553 coding downstream 397812 31203593 ~ 31204637 (-)
LOC110509413 LOC106563430 coding downstream 411323 31060271 ~ 31191126 (-)
G2175221 NA non-coding downstream 9205 31593013 ~ 31593244 (-)
G2175220 NA non-coding downstream 9685 31592420 ~ 31592764 (-)
G2175216 NA non-coding downstream 13288 31586631 ~ 31589161 (-)
G2175215 NA non-coding downstream 14567 31586448 ~ 31587882 (-)
G2174100 NA other downstream 1624882 29975363 ~ 29977567 (-)

Expression


Co-expression Network