G2175451


Basic Information

Item Value
gene id G2175451
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31638999 ~ 31642137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2486498
caatcagtcagaatgtcactccctgaccttagagaccCTTTTTATATGTCTctctttggtttggtcagggtgtgatttggggtgggtattctatgttctattatttgtatttttatgtttggccgggtagggttctcaatcagtcagaatgtcactccctgaccttagagaccCTTTTTATATGTCTctctttggtttggtcagggtgtgatttggggtgggtattctatgttctattatttgtatttttatgtttggccgggtagggttctcaatcagggacagctgcctatcgttgtctctgattgagaaccatacttaggtagccctttcccacctgtctttgtgggaagttgactttgtttatagCCTTTAGTGGCATGGTTTGTggtgtagtgtttattgttttgttcggcgtaTTTTCTAATAAAAAAtcaaatgtacgctcaccacgctgcaccttggtatAGTTCTTTCAACGGCCGTGACACAGAATCATCATTTATGTCCCTGCCCCCAAATATAACACCTCCCACCAGTCTAAATCCTGATCGCCCTTAGGTCCTGTGCATTTATTTGCATCTTTTCCAACATATAGAAATATTTTTTCACAGGCTGATGACAGAGTACGcgagtgtgtacatgtgtttctgTTGTGTTGTATGTCAGTGTGCTCACCCATCATTTGTCCACTGCTAAAAGAGTTCCTAACTTCCTATGTCTAAAATGATAGTCTCATCAATTCAAacaccccactgggcacagacgtcagttcaacgtctagttttgagttgcatttggttgagttgtcaaataGTGTGAATTCAAGTTTAAATCATCAACAACAATGGCACCCTGTCATTGGATTGAGGTTAAAggttgggtgaaaaaaagacgATATTCCCCGACATTGATTACTTTTTACAAATCATTGATTATAACATTGATTATTTTGGAAAttacaacgttgattcaaccggtttttgcccagtgggactTGACATCACTCTGCTACcaatctctctgtctgactcagtCCCAGTGAGACTGAACACAGACAATATTAAGGGGTGAACATTGCACTTTGAGGACAGCGGAATTCTTGATGTAAAGGTTATGATTTGCATGTTATCTGGCCtcatttaaatgtttttgttgCTAAAACAAAGCATCGTAACACATTAAAATACTGCTAGTTTACCACAGTGGGTTCTACCCTGTGTCTCAGGCTGAGTAGGAATGATCTACTGTGCCTCTCATTATgtggtccacactccagtcttTAATGAAGGAGTAAAGAGGTTCTTCCAAACAAGCAGGGAAAGCCTTGGTTTTAATTGTCATTGACGCAGAAATGGTTTGATTTGGAGGACAATACACATCACATGGACACAGACCATGTCAGCGGGCTGCAAACAGTGAATAAAGCGTAGCTCCACGATGTGCCTGCCAGTGCAGAGCCTGGATCAGCCCATCCCACCTGCTAGTGCAAAAAGACTGCTTACAGGGGCACTGCAAATCTGCCCAAATAACTAAAGCCATGCCACATTTACACCCTGCTTGGGCTGGTCTCTCTTAAAGGGACATGTGCACAGTTTACACACAGAGAAGATAAAAAGGAAGAAACTGCTGTTAAAGGACATAGAGTGACAGGCCAGTCACATACGGAGATGACGAGGTGATGCTAACCTTTGGCTTTCTGCTGGGTACTAGGCATTCTGCGGACTCAGAGGCAGCTGCAGAGAAAGAGTGTCCTATGGTAGAGCTGGTCACACATTCAGTGAGAGAGCTGAGCCTCATGTTGCTTCGTGGCATCAAAGAGTTCTCCTTTCATTGATAACACCATCATGTTTGATAAAGTAGAGTGCAACACCTCCTTCATTCAaccaccatctctctccatctccaactTTGCCCTCATTGGTCTCTCTGGAAGACAGAAACCTAATGCTCCATGCTTTGGCCTCACCCTCTGTTTGTGGACATGATCAGTCAGTGAGGGATCTGTAATATATATGatctaattaagcaataaggcacagagggggtgtggtatatggccaatataccattgctatgggctgttcttatgcacaacgcaacacGGATTGCCTGGACACAGCTCTTAGCCGTGGTGTATTTGCCATATACcccaaacccccgaggtgccttactgctattataaactggtaaccaacataattagagcagtaaaaataaacgttttgtcatacctgatgtatacggtctgatataccacggctttcagacaATCCGCATTCAGggttcaaaccacccagtttataatctttGTTTTTGCACGTTCAAATATTTCCTTTTTTCATACGTGGTACAATGCAATGCGCAAAATGGATATGCGCAAATTCTTGAAGCAAAATGTTACTGAGGACATGCACGTTTTTGATTATACTGGATGGTGAAAGAGCGATGTTCCTCGGCTGTTCTTCATCTTTCTCTGATTGTCTTTGGCTCCATCGTTTCCTCTTCATGCTCGCGACTCTTTCTTAGAGTGGGGCTTGTTTCCCAAAAGTGAGTCAATCTCAGCCACGGTCTGAGGAGTCATCTGTGAAATAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2486498 True 2595 lncRNA 0.43 2 31638999 31642137

Neighbor

gene id symbol gene type direction distance location
LOC110510028 psmb6 coding downstream 25432 31610543 ~ 31613567 (-)
LOC118945265 inca1 coding downstream 28589 31608260 ~ 31610410 (-)
tnfsf13 tnfsf13 coding downstream 31770 31604094 ~ 31607229 (-)
LOC118945266 NA coding downstream 78843 31558833 ~ 31560156 (-)
LOC118945323 NA coding downstream 334969 31297252 ~ 31304030 (-)
xrra1 xrra1 coding upstream 31210 31673347 ~ 31688712 (-)
LOC110510035 LOC106563537 coding upstream 41507 31683644 ~ 31687101 (-)
LOC110510037 LOC106563414 coding upstream 85666 31726537 ~ 31731451 (-)
LOC110509376 LOC107567170 coding upstream 94576 31736713 ~ 31738259 (-)
LOC110510038 sycn coding upstream 97765 31739902 ~ 31740562 (-)
G2175417 NA non-coding downstream 36610 31602171 ~ 31602389 (-)
G2175221 NA non-coding downstream 45755 31593013 ~ 31593244 (-)
G2175220 NA non-coding downstream 46235 31592420 ~ 31592764 (-)
G2175216 NA non-coding downstream 49838 31586631 ~ 31589161 (-)
G2175459 NA non-coding upstream 14972 31657109 ~ 31659689 (-)
G2175418 LOC106563537 non-coding upstream 41512 31602449 ~ 31688677 (-)
G2175489 NA non-coding upstream 64904 31707041 ~ 31707373 (-)
G2175491 NA non-coding upstream 68672 31710809 ~ 31711045 (-)
G2175480 NA non-coding upstream 78361 31720498 ~ 31797706 (-)
G2175135 NA other downstream 117811 31520052 ~ 31521188 (-)
G2174894 NA other downstream 632564 31003755 ~ 31006435 (-)
G2174463 NA other downstream 965898 30672590 ~ 30673101 (-)
LOC110510010 requ other downstream 1326218 30299615 ~ 30312873 (-)
G2174100 NA other downstream 1661432 29975363 ~ 29977567 (-)
G2175420 NA other upstream 27197 31669334 ~ 31673189 (-)
G2175503 NA other upstream 79815 31721952 ~ 31726394 (-)
G2175969 LOC100194703 other upstream 621146 32263283 ~ 32266089 (-)

Expression


Co-expression Network