G2175459


Basic Information

Item Value
gene id G2175459
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31657109 ~ 31659689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2486506
GTTTGGTGTATTATACATACGGCAAATCATCTAATTGTGTCTAACTATTTGACAAGCATGTTACTGTTGTGCTCTATCCCAGTGTGTTCCAAACCTGGTCCTTGGGCCCCCCCTGGGTGTACGtttagttttttgccctagcactacacagctgattcaaatcatcaaagcttgatgatgagtttgttatttgaatcaactgtgtagCGCTaaggcaaaaaacaaaatgtgtacCTGAGGGGCAacactgagtttgggaaaccatgCTCTATACCTTTTTTTAAAGACTGGGTCCTCCATCAACAGTATTCTTATTTTTCAATATTATTCCTCCCTGagccctctcttcttcttcagttCTCTGTATTGGAAAATGTTGGTGTCCTTCCAACTCATGACCTACATTTATATCAAATTAACAGAGCTCTATTGTTGTGCTCATCCTGTTAGGCCATTACAACCCTTGAGAAAACAAACTATAGCACTGGAGCACAAATCCAAATTACAGGCACAATTTATAAAGGAGAAATTCCCCTGGTCCGACTGGGTTCACTGGAGGGTAGTCCAAGGAATAACAACAGCCTGATTTGTGCAGGAATTCTTGCCTCAGGTAGAGCTCAACTATATCATATTTTTGGTTGGCTCCAACTTTTAGCCTTGTCAATCACGTGCAAGAATGCCTTGCCACTGTGCAAAGGGAAAAAAGATGCATCAAGTACTGAAATCACACATAATCCTATGGAAACTTAGTCTGTAGAAAACTGTCCAAACATAATGATAAACACCTCAGAGAACATAATAGAAAGAAGTTCCAGCAAACCAATGTAGCCACTCTTATGAAAGAACAGATACAACTGCTGTTGCAGGGCAATACCGATGCCCAGATATCAAACCCACGTTTTCTGAGGAAAGCCCTATATGTATACTGCCCTAccagcaaaaaggcagtaactgctcacagcgtggaactgagaaaaatggtttttatttaccttggtttcacagtaactttatgcagtaactgctaacatgacccccattttctccaaaacacaatacaatagaggcaggatacaAGTCCACATGTTTaggcatgtatttaatgtagaaAAATGACATTAACTAATTTTCaaccaaatgagcagttactgcctttttgcttgctAGGGCAGTATAGCCCAATGAACTGAAGCCATGGCGTCTCAGGCAAGGACCTTCCAGTACACACTCAAATGTCTACAGAATGTACAAACAAACATGTTAAACAAACCAAAGTTGTACGCTCTGCCTCAAAATGACATCTGTTAGCATATTTGTATTTACAATAAATATGTTAATGAATATTTCTCGGTACATTCTGAAAAGGcatacaatttcaaacagcagtATTTAGCAGAACAGTAAAGTGATTGTAAATATGGTCTACTCTATAAAGGTGTTATTGCCAGATGGCTGTCTAATTTGCCCAGTGTATTTTTCTATTATATACATGTACACCTGTATTTTTTAGATAATACTGTTTTTACTGTATTCCAGTATGCCAGAAAACAAAAATGAGATACAACTGTAATTCATTTAAAGTattttttccattttggtttcttCTACTACCAAATGCTACCAACAATGTTGACAATTCTGCTGACTAATTGTTACTGAGAATATGGAACATCACATTGTAATGAGTTATGATGacatttaaaaataaacaaaagctTGTTATTCTATAACCAATAAGCAGTGCTAtgtttcatgtttaatgaaatgCATATGAATGCTGTGCATTTTCCATTGATGTCAAAGTCAGGGGATGAGAGTTAAGAAGAGCACAGGCTTTCTAGCTGGTCTGGATACAAGAACTTCACTACCTCCCTGATACCATCCTCACAGGTCCTGGTCTTGGGAAATTCCTTCTGGTTGTCTTCTTCCTCCTTGAATCTTTTCCAAGTCTCTTCATCCAATGTCGCCAGTAAAGTGTAGTTATCTGGATTATCTAGAAGATCTTTCTTCAGAACTTCCCCAGTTTCCATTAATTGTAAAACTTCTCCTACTGTCTTCCATACTTGCACTTCAACTTCAGCAGTCCC

Function

NR:

description
chordin-like protein 2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2486506 True 2087 lncRNA 0.38 3 31657109 31659689

Neighbor

gene id symbol gene type direction distance location
LOC110510028 psmb6 coding downstream 43542 31610543 ~ 31613567 (-)
LOC118945265 inca1 coding downstream 46699 31608260 ~ 31610410 (-)
tnfsf13 tnfsf13 coding downstream 49880 31604094 ~ 31607229 (-)
LOC118945266 NA coding downstream 96953 31558833 ~ 31560156 (-)
LOC118945323 NA coding downstream 353079 31297252 ~ 31304030 (-)
xrra1 xrra1 coding upstream 13658 31673347 ~ 31688712 (-)
LOC110510035 LOC106563537 coding upstream 23955 31683644 ~ 31687101 (-)
LOC110510037 LOC106563414 coding upstream 68114 31726537 ~ 31731451 (-)
LOC110509376 LOC107567170 coding upstream 77024 31736713 ~ 31738259 (-)
LOC110510038 sycn coding upstream 80213 31739902 ~ 31740562 (-)
G2175441 NA non-coding downstream 4910 31630753 ~ 31652199 (-)
G2175451 NA non-coding downstream 14972 31638999 ~ 31642137 (-)
G2175417 NA non-coding downstream 54720 31602171 ~ 31602389 (-)
G2175221 NA non-coding downstream 63865 31593013 ~ 31593244 (-)
G2175418 LOC106563537 non-coding upstream 23960 31602449 ~ 31688677 (-)
G2175489 NA non-coding upstream 47352 31707041 ~ 31707373 (-)
G2175491 NA non-coding upstream 51120 31710809 ~ 31711045 (-)
G2175480 NA non-coding upstream 60809 31720498 ~ 31797706 (-)
G2175476 selenow non-coding upstream 88084 31747773 ~ 31750415 (-)
G2175135 NA other downstream 135921 31520052 ~ 31521188 (-)
G2174894 NA other downstream 650674 31003755 ~ 31006435 (-)
G2174463 NA other downstream 984008 30672590 ~ 30673101 (-)
LOC110510010 requ other downstream 1344328 30299615 ~ 30312873 (-)
G2174100 NA other downstream 1679542 29975363 ~ 29977567 (-)
G2175420 NA other upstream 9645 31669334 ~ 31673189 (-)
G2175503 NA other upstream 62263 31721952 ~ 31726394 (-)
G2175969 LOC100194703 other upstream 603594 32263283 ~ 32266089 (-)

Expression


Co-expression Network