G2175420


Basic Information

Item Value
gene id G2175420
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31669334 ~ 31673189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2486453
GTGACGTCGGTGTGTTCCCGCCTGAAACGGAGGCAAAAGAGCTATCGAATAGATAGCAACATACATTGGACAATAGATGACCTTTCTTTGGATAATATTGATGAATTTGTCAACGACCAGTATATTATCAATGCTATATCATTACCTGGACCGCAAGAGGAACGAAAGCTCAGCTCTGCTCCATGCTACCTACCTTGTGTCTGGCAAGTTTGTCAATAATGATACCACGATGTGAAGTCGAAGCAGAGCCTGACCGTCAGTGTACAGTGTTCAGAAGGCAGTGCTGGAAGACAGTGGTCCCCTGTACAGTGCGGATTATGATGCTGTGAAAGAGAACCTAAGGAACTGCAGCAGGTGCAGCAGGCTCATGAGATGACACAGGCCCCACCGCTAGAGACGTTGCACACCAAATCTGGCATCAATGGTCATTCTAGTCTGGCCTCTAAACCCACCTCCAAGCAGTCCAAAGGCATTATGGGAATGTTTGCAAACAAGAATGTCTCCAAGAATCAAGAGTCAAGCAAAGAGTGAACattggagcagagagagaatgcACCTGTGGTGCGTGTTTCTGTGCTCTGCAAAAGCCATGTGATGTTCATTTCATCCAGTACAACCCATAATGCTATACCTTGTGATGtcacatttatttgatattgtaGGTTGAGCCCTCCAAAATTAAACCAGCTCCAAAGACACATCCTATGAGTAACTTCTTTGGGAATCAAGCAACCAATAAATCCTGTATGTCCGCCACATCTGGCTTACATCTGACAAATCCATCAAGGAAGAGGTAGAAGCAGCCCATATGTCCTCTTCAGTGGATGAGAAGCCCTCAAGCCCAGTCTGTAAAGCAGAGACTCCTGTCAAGGAGGAACTACCAAAAGGTGCTGCGGTTGAGAAAGATATTAGTAGTAAGAGCAAGCGTCTTGACCATTCCGATAGTGAAGAGAAGGAGAACAAGCGTTGGAGGATAAAGAAGCCCCAGTCAGACAGTACTGATGATAAGGTTATTCCAGATTCTCCTCCGAGGTTGCAAGAACAGAGGGGCCCATCACCAAGCCTTCTGAATCAAAAAAAGAAAGAACCTTTTGCTATTTTTCATTCAGATTCCATGCAGGAGCTTTCGGATtgtaagaggaggaagaggagacctGTCTTGAAACCGCGCACCTTTTTGGATGACTAGGGGTGCATTGTGACTGAGAAAGGCTATGAGAGTGAATCCTACTCTGAGACGGAGGATGACTTTAAGACAAGTAAACCATCCCAGCTGAATCCAGACCCACCAAAACCATCAACTGGCAAGAAAGGGGAGGACAAGAGAAGGAAGAATGTTGCAGCCTCTAATAAATCAACTAAGCAGGCTTCTATTATGGGATTCTTTCAAAATAAATGATCGACCTACTCTCAATGTACTGAACACTGAGAAGATTAACATCCGTTTTGAGGGACTTGAGGCCCAGGTGGAGAGAATCTAGACTGACGCACATTATCAAATGTCCCGGCAACATTTGGAAGAATGCTGTAATTTTTTGAATATATTTCCACATTAACAGAATATGATATGATAAAGTGGCATATAATAAAGTGGCATAAATATATCCACAACACATTGTAAAGTACTGTCAGAGATAGTTGACCATTGCCATGTTATTGTAGCATTTATTTTGTGGGTTTGAAATTGGTTACAATTCTGCAAGTATTGAAGGGGGGGGGACCAGAACAGATTCTGAACAGCCGCAGTACGGCACGCTCTTACCTGCCTCCTCAACTGGTGCCTTTCCTTGGGTcttgtgggaaaaaaatgtctgtcggaa
>TU2486455
GTGACGTCGGTGTGTTCCCGCCTGAAACGGAGGCAAAAGAGCTATCGAATAGATAGCAACATACATTGGACAATAGATGACCTTTCTTTGGATAATATTGATGAATTTGTCAACGACCAGTATATTATCAATGCTATATCATTACCTGGACCGCAAGAGGAACGAAAGCTCAGCTCTGCTCCATGCTACCTACCTTGTGTCTGGCAAGTTTGTCAATAATGATACCACGATGTGAAGTCGAAGCAGAGCCTGACCGTCAGTGTACAGTGTTCAGAAGGCAGTGCTGGAAGACAGTGGTCCCCTGTACAGTGCGGATTATGATGCTGTGAAAGAGAACCTAAGGAACTGCAGCAGGTGCAGCAGGCTCATGAGATGACACAGGCCCCACCGCTAGAGACGTTGCACACCAAATCTGGCATCAATGGTCATTCTAGTCTGGCCTCTAAACCCACCTCCAAGCAGTCCAAAGGCATTATGGGAATGTTTGCAAACAAGAATGTCTCCAAGAATCAAGAGTCAAGCAAAGAGTGAACattggagcagagagagaatgcACCTGTGGTGCGTGTTTCTGTGCTCTGCAAAAGCCATGTGATGTTCATTTCATCCAGTACAACCCATAATGCTATACCTTGTGATGtcacatttatttgatattgtaGGTTGAGCCCTCCAAAATTAAACCAGCTCCAAAGACACATCCTATGAGTAACTTCTTTGGGAATCAAGCAACCAATAAATCCTGTATGTCCGCCACATCTGGCTTACATCTGACAAATCCATCAAGGAAGAGGTAGAAGCAGCCCATATGTCCTCTTCAGTGGATGAGAAGCCCTCAAGCCCAGTCTGTAAAGCAGAGACTCCTGTCAAGGAGGAACTACCAAAAGGTGCTGCGGTTGAGAAAGATATTAGTAAGAGCAAGCGTCTTGACCATTCCGATAGTGAAGAGAAGGAGAACAAGCGTTGGAGGATAAAGAAGCCCCAGTCAGACAGTACTGATGATAAGGTTATTCCAGATTCTCCTCCGAGGTTGCAAGAACAGAGGGGCCCATCACCAAGCCTTCTGAATCAAAAAAAGAAAGAACCTTTTGCTATTTTTCATTCAGATTCCATGCAGGAGCTTTCGGATtgtaagaggaggaagaggagacctGTCTTGAAACCGCGCACCTTTTTGGATGACTAGGGGTGCATTGTGACTGAGAAAGGCTATGAGAGTGAATCCTACTCTGAGACGGAGGATGACTTTAAGACAAGTAAACCATCCCAGCTGAATCCAGACCCACCAAAACCATCAACTGGCAAGAAAGGGGAGGACAAGAGAAGGAAGAATGTTGCAGCCTCTAATAAATCAACTAAGCAGGCTTCTATTATGGGATTCTTTCAAAATAAATGATCGACCTACTCTCAATGTACTGAACACTGAGAAGATTAACATCCGTTTTGAGGGACTTGAGGCCCAGGTGGAGAGAATCTAGACTGACGCACATTATCAAATGTCCCGGCAACATTTGGAAGAATGCTGTAATTTTTTGAATATATTTCCACATTAACAGAATATGATATGATAAAGTGGCATATAATAAAGTGGCATAAATATATCCACAACACATTGTAAAGTACTGTCAGAGATAGTTGACCATTGCCATGTTATTGTAGCATTTATTTTGTGGGTTTGAAATTGGTTACAATTCTGCAAGTATTGAAGGGGGGGGGACCAGAACAGATTCTGAACAGCCGCAGTACGGCACGCTCTTACCTGCCTCCTCAACTGGTGCCTTTCCTTGGGTcttgtgggaaaaaaatgtctgtcggaa
>TU2486456
GTGACGTCGGTGTGTTCCCGCCTGAAACGGAGGCAAAAGAGCTATCGAATAGATAGCAACATACATTGGACAATAGATGACCTTTCTTTGGATAATATTGATGAATTTGTCAACGACCAGTATATTATCAATGCTATATCATTACCTGGACCGCAAGAGGAACGAAAGCTCAGCTCTGCTCCATGCTACCTACCTTGTGTCTGGCAAGTTTGTCAATAATGATACCACGATGTGAAGTCGAAGCAGAGCCTGACCGTCAGTGTACAGTGTTCAGAAGGCAGTGCTGGAAGACAGTGGTCCCCTGTACAGTGCGGATTATGATGCTGTGAAAGAGAACCTAAGGAACTGCAGCAGGTACAGTGCAATTTGCTGTGCTGATGCAGTATCCATGTCCTCGACAGGTGCAGCAGGCTCATGAGATGACACAGGCCCCACCGCTAGAGACGTTGCACACCAAATCTGGCATCAATGGTCATTCTAGTCTGGCCTCTAAACCCACCTCCAAGCAGTCCAAAGGCATTATGGGAATGTTTGCAAACAAGAATGTCTCCAAGAATCAAGAGTCAAGCAAAGAGTGAACattggagcagagagagaatgcACCTGTGGTGCGTGTTTCTGTGCTCTGCAAAAGCCATGTGATGTTCATTTCATCCAGTACAACCCATAATGCTATACCTTGTGATGtcacatttatttgatattgtaGGTTGAGCCCTCCAAAATTAAACCAGCTCCAAAGACACATCCTATGAGTAACTTCTTTGGGAATCAAGCAACCAATAAATCCTGTATGTCCGCCACATCTGGCTTACATCTGACAAATCCATCAAGGAAGAGGTAGAAGCAGCCCATATGTCCTCTTCAGTGGATGAGAAGCCCTCAAGCCCAGTCTGTAAAGCAGAGACTCCTGTCAAGGAGGAACTACCAAAAGGTGCTGCGGTTGAGAAAGATATTAGTAAGAGCAAGCGTCTTGACCATTCCGATAGTGAAGAGAAGGAGAACAAGCGTTGGAGGATAAAGAAGCCCCAGTCAGACAGTACTGATGATAAGGTTATTCCAGATTCTCCTCCGAGGTTGCAAGAACAGAGGGGCCCATCACCAAGCCTTCTGAATCAAAAAAAGAAAGAACCTTTTGCTATTTTTCATTCAGATTCCATGCAGGAGCTTTCGGATtgtaagaggaggaagaggagacctGTCTTGAAACCGCGCACCTTTTTGGATGACTAGGGGTGCATTGTGACTGAGAAAGGCTATGAGAGTGAATCCTACTCTGAGACGGAGGATGACTTTAAGACAAGTAAACCATCCCAGCTGAATCCAGACCCACCAAAACCATCAACTGGCAAGAAAGGGGAGGACAAGAGAAGGAAGAATGTTGCAGCCTCTAATAAATCAACTAAGCAGGCTTCTATTATGGGATTCTTTCAAAATAAATGATCGACCTACTCTCAATGTACTGAACACTGAGAAGATTAACATCCGTTTTGAGGGACTTGAGGCCCAGGTGGAGAGAATCTAGACTGACGCACATTATCAAATGTCCCGGCAACATTTGGAAGAATGCTGTAATTTTTTGAATATATTTCCACATTAACAGAATATGATATGATAAAGTGGCATATAATAAAGTGGCATAAATATATCCACAACACATTGTAAAGTACTGTCAGAGATAGTTGACCATTGCCATGTTATTGTAGCATTTATTTTGTGGGTTTGAAATTGGTTACAATTCTGCAAGTATTGAAGGGGGGGGGACCAGAACAGATTCTGAACAGCCGCAGTACGGCACGCTCTTACCTGCCTCCTCAACTGGTGCCTTTCCTTGGGTcttgtgggaaaaaaatgtctgtcggaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2486453 False 1820 TUCP 0.44 9 31669334 31673189
TU2486455 False 1817 TUCP 0.44 9 31669334 31673189
TU2486456 True 1864 TUCP 0.44 9 31669334 31673189

Neighbor

gene id symbol gene type direction distance location
LOC110510028 psmb6 coding downstream 55767 31610543 ~ 31613567 (-)
LOC118945265 inca1 coding downstream 58924 31608260 ~ 31610410 (-)
tnfsf13 tnfsf13 coding downstream 62105 31604094 ~ 31607229 (-)
LOC118945266 NA coding downstream 109178 31558833 ~ 31560156 (-)
LOC118945323 NA coding downstream 365304 31297252 ~ 31304030 (-)
xrra1 xrra1 coding upstream 158 31673347 ~ 31688712 (-)
LOC110510035 LOC106563537 coding upstream 10455 31683644 ~ 31687101 (-)
LOC110510037 LOC106563414 coding upstream 54614 31726537 ~ 31731451 (-)
LOC110509376 LOC107567170 coding upstream 63524 31736713 ~ 31738259 (-)
LOC110510038 sycn coding upstream 66713 31739902 ~ 31740562 (-)
G2175459 NA non-coding downstream 9645 31657109 ~ 31659689 (-)
G2175441 NA non-coding downstream 17135 31630753 ~ 31652199 (-)
G2175451 NA non-coding downstream 27197 31638999 ~ 31642137 (-)
G2175417 NA non-coding downstream 66945 31602171 ~ 31602389 (-)
G2175418 LOC106563537 non-coding upstream 10460 31602449 ~ 31688677 (-)
G2175489 NA non-coding upstream 33852 31707041 ~ 31707373 (-)
G2175491 NA non-coding upstream 37620 31710809 ~ 31711045 (-)
G2175480 NA non-coding upstream 47309 31720498 ~ 31797706 (-)
G2175476 selenow non-coding upstream 74584 31747773 ~ 31750415 (-)
G2175135 NA other downstream 148146 31520052 ~ 31521188 (-)
G2174894 NA other downstream 662899 31003755 ~ 31006435 (-)
G2174463 NA other downstream 996233 30672590 ~ 30673101 (-)
LOC110510010 requ other downstream 1356553 30299615 ~ 30312873 (-)
G2174100 NA other downstream 1691767 29975363 ~ 29977567 (-)
G2175503 NA other upstream 48763 31721952 ~ 31726394 (-)
G2175969 LOC100194703 other upstream 590094 32263283 ~ 32266089 (-)
LOC110510065 LOC106603070 other upstream 611561 32282188 ~ 32287263 (-)

Expression


Co-expression Network