G2175644


Basic Information

Item Value
gene id G2175644
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31991010 ~ 31992579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2486707
GTCACTGCTGAACAAAAAGGTATTTTGGATAAAACAGCATTTGGTGAAATAAtatcaaataaatacatttaacaaAGCACCACAATATTGATCAAAGGCATGAAGTTGCACTGTGTATATGGGAAGCTACATTCAATAAAAATAGTTTAAATTTCCAGCACATGCACCAGACAAAGTTAGAGAAAAATTCTAAACTGAATATGTAAAATAAAATCCATCAGGAGAAACTAAAAAAGGTGCTAAATAATAAAAACACAATTCACATTAAAGCAGTACAAGCAAGAAACCTTTTTCCCTTTTAAAAACACATTTGGACACTTGGAAAGGACTGGGAATGAAATCACACTCAAGCCAGTTAGCTACAACAAAAGAAGAAAAACaatcaaacacacaaacagacattcATTTGAGACTACGACGAGCACATATCCTATCACACAATCAGAACCCAACAGCCTATTGTATGTTGATGCTGTTTTAAGTCAAATTTGAAAAGTAACAACACCCTGAAGGGGTGGGTGTACCGAGAGTGTTTAAatactggtcccagatctgtctcgGCTTTAGACCTCtgactatagcctggtcccagacctatatGATATTTTGCCAACTCCTCTGAGAATTGTTGCCCTGCCATGTATAAAACATGTAACCTGTATGGCATGACAACTACACAACAGTCAGAGACGTCTAAACCCTAGACAGGTCTGGAACCAGGCTATAGTCAGAAGTCTATACCCTTGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTTGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTAGACAGgtctggaaccaggctagtCAGAGAAGTCTATACCCTAGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTAGACCAGTGGCAGCAGCCCTACACGGTCAGCCCCACAGCTCTCCCTGGAGGGCACACGCAAAAACAACAGCCCAATTCAAAATATCCAACTAACAGAAATACAATCTCTTGTAAGTTTGGACATAAAATGATGTAACTAAGATGTAAAAAGGGTTTAAGAGCGAGTTGGACATGGAAGGATAATAAAACAGTGTGAgtagaaatggggggggggggtcatctcTCCCCTCAGTGCGACGGCGGACAATGGGGGGGTGGACAgttttcacattcctgcaggcagCGTACGGAGGAGACCGGGGGGGCTCTTTACTTCTTCCAAACGGTGTAGAAAACCCACCTGAGTCAGCTCATTAAGGAAAATGCTATGTAAACAACAAGTAACCAAGACTCTTAAGTGCAATACTCTTTTCTTGAAGGATACAGTTCCATATAAGAGggcacacacaccacctccttgGAGAAGTCTACAGGACATGAGAGCCTTCCCAGCTGCTCCTCATAAAGAGCCAGTGTCTCAGTCAGATTGGCACTATT
>TU2486708
GTCACTGCTGAACAAAAAGGTATTTTGGATAAAACAGCATTTGGTGAAATAAtatcaaataaatacatttaacaaAGCACCACAATATTGATCAAAGGCATGAAGTTGCACTGTGTATATGGGAAGCTACATTCAATAAAAATAGTTTAAATTTCCAGCACATGCACCAGACAAAGTTAGAGAAAAATTCTAAACTGAATATGTAAAATAAAATCCATCAGGAGAAACTAAAAAAGGTGCTAAATAATAAAAACACAATTCACATTAAAGCAGTACAAGCAAGAAACCTTTTTCCCTTTTAAAAACACATTTGGACACTTGGAAAGGACTGGGAATGAAATCACACTCAAGCCAGTTAGCTACAACAAAAGAAGAAAAACaatcaaacacacaaacagacattcATTTGAGACTACGACGAGCACATATCCTATCACACAATCAGAACCCAACAGCCTATTGTATGTTGATGCTGTTTTAAGTCAAATTTGAAAAGTAACAACACCCTGAAGGGGTGGGTGTACCGAGAGTGTTTAAatactggtcccagatctgtctcgGCTTTAGACCTCtgactatagcctggtcccagacctatatGATATTTTGCCAACTCCTCTGAGAATTGTTGCCCTGCCATGTATAAAACATGTAACCTGTATGGCATGACAACTACACAACAGTCAGAGACGTCTAAACCCTAGACAGGTCTGGAACCAGGCTATAGTCAGAAGTCTATACCCTTGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTTGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTAGACaggtctggaaccaggctagtCAGAGAAGTCTATACCCTAGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTAGACCAGTGGCAGCAGCCCTACACGGTCAGCCCCACAGCTCTCCCTGGAGGGCACACGCAAAAACAACAGCCCAATTCAAAATATCCAACTAACAGAAATACAATCTCTTGTAAGTTTGGACATAAAATGATGTAACTAAGATGTAAAAAGGGTTTAAGAGCGAGTTGGACATGGAAGGATAATAAAACAGTGTGAgtagaaatggggggggggggtcatctcTCCCCTCAGTGCGACGGCGGACAATGGGGGGGTGGACAgttttcacattcctgcaggcagCGTACGGAGGAGACCGGGGGGGCTCTTTACTTCTTCCAAACGGTGTAGAAAACCCACCTGAGTCAGCTCATTAAGGAAAATGCTATGTAAACAACAAGTAACCAAGACTCTTAAGTGCAATACTCTTTTCTTGAAGGATACAGTTCCATATAAGAGggcacacacaccacctccttgGAGAAGTCTACAGGACATGAGAGCCTTCCCAGCTGCTCCTCATAAAGAGCCAGTGTCTCAGTCAGATTGGCACTATT
>TU2486709
GTCACTGCTGAACAAAAAGGTATTTTGGATAAAACAGCATTTGGTGAAATAAtatcaaataaatacatttaacaaAGCACCACAATATTGATCAAAGGCATGAAGTTGCACTGTGTATATGGGAAGCTACATTCAATAAAAATAGTTTAAATTTCCAGCACATGCACCAGACAAAGTTAGAGAAAAATTCTAAACTGAATATGTAAAATAAAATCCATCAGGAGAAACTAAAAAAGGTGCTAAATAATAAAAACACAATTCACATTAAAGCAGTACAAGCAAGAAACCTTTTTCCCTTTTAAAAACACATTTGGACACTTGGAAAGGACTGGGAATGAAATCACACTCAAGCCAGTTAGCTACAACAAAAGAAGAAAAACaatcaaacacacaaacagacattcATTTGAGACTACGACGAGCACATATCCTATCACACAATCAGAACCCAACAGCCTATTGTATGTTGATGCTGTTTTAAGTCAAATTTGAAAAGTAACAACACCCTGAAGGGGTGGGTGTACCGAGAGTGTTTAAatactggtcccagatctgtctcgGCTTTAGACCTCtgactatagcctggtcccagacctatatGATATTTTGCCAACTCCTCTGAGAATTGTTGCCCTGCCATGTATAAAACATGTAACCTGTATGGCATGACAACTACACAACAGTCAGAGACGTCTAAACCCTAGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTAGACaggtctggaaccaggctagtCAGAGAAGTCTATACCCTAGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTAGACCAGTGGCAGCAGCCCTACACGGTCAGCCCCACAGCTCTCCCTGGAGGGCACACGCAAAAACAACAGCCCAATTCAAAATATCCAACTAACAGAAATACAATCTCTTGTAAGTTTGGACATAAAATGATGTAACTAAGATGTAAAAAGGGTTTAAGAGCGAGTTGGACATGGAAGGATAATAAAACAGTGTGAgtagaaatggggggggggggtcatctcTCCCCTCAGTGCGACGGCGGACAATGGGGGGGTGGACAgttttcacattcctgcaggcagCGTACGGAGGAGACCGGGGGGGCTCTTTACTTCTTCCAAACGGTGTAGAAAACCCACCTGAGTCAGCTCATTAAGGAAAATGCTATGTAAACAACAAGTAACCAAGACTCTTAAGTGCAATACTCTTTTCTTGAAGGATACAGTTCCATATAAGAGggcacacacaccacctccttgGAGAAGTCTACAGGACATGAGAGCCTTCCCAGCTGCTCCTCATAAAGAGCCAGTGTCTCAGTCAGATTGGCACTATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2486707 False 1482 lncRNA 0.42 2 31991010 31992579
TU2486708 False 1455 lncRNA 0.42 2 31991010 31992579
TU2486709 True 1369 lncRNA 0.42 2 31991010 31992579

Neighbor

gene id symbol gene type direction distance location
LOC100136606 cbr1 coding downstream 32446 31956161 ~ 31958564 (-)
LOC100135879 cbr1 coding downstream 43316 31942742 ~ 31947694 (-)
LOC118945355 LOC106563561 coding downstream 61943 31920420 ~ 31929067 (-)
LOC118945354 LOC106563561 coding downstream 70702 31914625 ~ 31920308 (-)
LOC110509423 LOC106563561 coding downstream 76675 31910070 ~ 31914335 (-)
LOC110510054 LOC106563567 coding upstream 28871 32021450 ~ 32037827 (-)
LOC110509424 NA coding upstream 110629 32103208 ~ 32106558 (-)
LOC110510059 LOC106563634 coding upstream 210412 32202991 ~ 32219471 (-)
LOC110510060 LOC106563578 coding upstream 238274 32230853 ~ 32237582 (-)
poglut3 kdelc2 coding upstream 253644 32246223 ~ 32252711 (-)
G2175645 spsy non-coding downstream 365 31989016 ~ 31990645 (-)
G2175630 NA non-coding downstream 19828 31970896 ~ 31971182 (-)
G2175629 NA non-coding downstream 20350 31970458 ~ 31970660 (-)
G2175615 NA non-coding downstream 82630 31908096 ~ 31908380 (-)
G2175607 LOC106563560 non-coding downstream 88270 31902464 ~ 31902740 (-)
G2175663 NA non-coding upstream 41430 32034009 ~ 32034314 (-)
G2175664 NA non-coding upstream 41803 32034382 ~ 32034713 (-)
G2175890 NA non-coding upstream 117062 32109641 ~ 32109877 (-)
G2175893 yo84 non-coding upstream 119107 32111686 ~ 32111908 (-)
G2175902 NA non-coding upstream 127927 32120506 ~ 32120943 (-)
LOC110509376 LOC107567170 other downstream 252775 31736713 ~ 31738259 (-)
LOC110510037 LOC106563414 other downstream 261716 31726537 ~ 31731451 (-)
G2175503 NA other downstream 264616 31721952 ~ 31726394 (-)
G2175418 LOC106563537 other downstream 304008 31602449 ~ 31688677 (-)
G2175969 LOC100194703 other upstream 270704 32263283 ~ 32266089 (-)
LOC110510065 LOC106603070 other upstream 292171 32282188 ~ 32287263 (-)
cpi1 cpi1 other upstream 438931 32395346 ~ 32433641 (-)
G2176363 NA other upstream 650823 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1518717 33511296 ~ 33512326 (-)

Expression


Co-expression Network