G2176362


Basic Information

Item Value
gene id G2176362
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32767583 ~ 32769398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2487606
AGTAAAACAATAAAATATTAAGCACAGGCATTTGAAGAAAATGTGCAAAGCAGCACTTTGTTtttatctacaacatattgtttTCAGACTGTACTGTAATTCTGGTAAGTTACTATCTCGTCATGGTAACTAAAAAGGTGTCTACTCAAAGAAATGAGCAAAATCTTCAGATTGCAGTTGCAGGCAGACGTGTGTGTCTTATTTTGGATAAAATGCATGAACAGTAAGCCAAATATCAGAGCAGAGCCTTTGAGTGACGTGACACTTGCTTTACTCCCAAATCTATTCTGTACACACTGTGTCTAGGTATCTGTGAAATCAGGAATGTATCTTATTGTCTTGGAAGTTGTGTTATATTATGAAGTAATTATTGATCCGGGATTATATGTTATTGTGGTTTCTTTTGCCtcgtctgtctcggtgtctgtatTAAATGTCCGAACGTGACATGCCATTTGGGCCACCAGCTGTGTCATGTCCATAGGAACAGGATATACAGAGATTTAGGtcatacaattatatttttgtccaATGCAAGTTCACAGAATCACTCAATTTACCGGTAATCTATCTGACAGCTGTCTTAAACTATCCTGGTAAACCATTCCATTATCAAATAATATATTTTAGTTTCTTACTTTAAACGTTAATAGTAATATTGACCAATCATGTTGTAATCTACAGCTGATAACAGTCTGGTGCAGATTGCGAAGCAGCAGTCACGATGAGTCTGGTAGCATACTCAATCAAGCCTGCTACAACTGCACATGTCAAATCCTCTTCATAGAACTAAACAATCATTTATAACCTCATTATGTCAAGAAGAACCTTTAGTCTTTTGTTATGTCACATGTTGTAAATGGAAGAGGTCTAATAGCCTTAACAGTCTTCTAAGATATTAGTGGCAGTGTATGCAAATGAAATAAACTCCTAATAATATTACATTTTTGCTCAAATACTGTCTTATCAACAACCCTAATTTTGTAAACTTAACCTGAACCATCAAAATGCATGGACAATAACACATATACTAAATACCCATTTCTATACCCACTCACAGGAAGTTACATTTCAGTACAATTATTAATATCAATTTGTACCTTCACAACAGCTGTATTGTAATCCCTCAATAccttaataataataaataaaaacccaGTGTCAAATTAATTACTCTCCTTTTCTTACCCTACATAAGAAGGCAAACTTGTGACCAACAATATTTTTCAGAGGGAATCTTTAGCCCAAGCcagattttttatatttttttgtgaaaattaTACCACAGTAAGCTTGGACTCCTAATAGTGTCCAAAACGGTCAATATGGGATTACATTTACCATGTTCCAAATTCCATGGCAATgtttgcacacgcacacacacgcacacatacaaatacacacgcacgagtacacacatacacagattaACACATACACTCATACAAAGAtatatttatactgtatataggtgTGTGTTTgaatttgtgtatgtgtgtgtgtttctttcatAGGCCTTTCGGTAGTGTTCAACACATAAATCAGTATTTTAGGAAAGCATACATTTAGAGGCCTGTAGTAAGGATCCATCCAGTGGATCAATATCAAACTACAAAGCCTTAAGGCCACCATCTTGTTTTTCTtttagaataacaaaaaaaactcATTTCTGGGAAACTTAATGTGCCAGTGTCTATACTGATTATTCTTCATgcctcaaaataaaaaaaaatctagtgCCATTTTTCTTTTCATTTAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2487606 True 1761 lncRNA 0.34 2 32767583 32769398

Neighbor

gene id symbol gene type direction distance location
LOC110510092 cssa11h3orf30 coding downstream 40581 32718378 ~ 32727002 (-)
zgc:175280 LOC106563607 coding downstream 98213 32662292 ~ 32669370 (-)
LOC110510084 LOC106563605 coding downstream 107118 32650426 ~ 32660465 (-)
LOC110510077 LOC106563593 coding downstream 281241 32480854 ~ 32486342 (-)
LOC110510076 LOC106563637 coding downstream 296478 32461682 ~ 32471105 (-)
si:dkey-251i10.1 LOC106563614 coding upstream 28227 32797625 ~ 32799913 (-)
LOC110510097 LOC106563615 coding upstream 31182 32800580 ~ 32813597 (-)
si:ch211-107p11.3 LOC106563619 coding upstream 72715 32842113 ~ 32844311 (-)
LOC118945341 NA coding upstream 135689 32905087 ~ 32916224 (-)
LOC118945287 NA coding upstream 185461 32954859 ~ 32957801 (-)
G2176377 NA non-coding downstream 119649 32646687 ~ 32647934 (-)
G2176368 NA non-coding downstream 137370 32629948 ~ 32630213 (-)
G2176190 NA non-coding downstream 196205 32570852 ~ 32571378 (-)
G2176184 NA non-coding downstream 204526 32562490 ~ 32563057 (-)
G2176359 NA non-coding upstream 5421 32774819 ~ 32775108 (-)
G2176360 NA non-coding upstream 9896 32779294 ~ 32779568 (-)
G2176433 LOC106563613 non-coding upstream 22480 32791878 ~ 32792317 (-)
G2176448 NA non-coding upstream 45073 32814471 ~ 32814697 (-)
G2176442 NA non-coding upstream 55834 32825232 ~ 32825994 (-)
G2176363 NA other downstream 123011 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 333942 32395346 ~ 32433641 (-)
LOC110510065 LOC106603070 other downstream 482100 32282188 ~ 32287263 (-)
G2175969 LOC100194703 other downstream 501494 32263283 ~ 32266089 (-)
LOC110509376 LOC107567170 other downstream 1029348 31736713 ~ 31738259 (-)
G2177695 NA other upstream 741898 33511296 ~ 33512326 (-)
G2177991 cfb other upstream 1352084 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 1569513 34338911 ~ 34342460 (-)
G2178372 NA other upstream 2033793 34792330 ~ 34809382 (-)
G2179862 NA other upstream 3192586 35961984 ~ 35962832 (-)

Expression


Co-expression Network