G2176615


Basic Information

Item Value
gene id G2176615
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33058769 ~ 33062428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2487897
agggagcgtttgacagtgatgaggggtggtcgtttgaccgcggacccataacggatgcaggcaatgaggcagtgatcgctgagatcctggttgaaaacagcagaggtgtattggccaggatgatatctatgagggtgcccatgtttacggattgaGGGTTGTaactggtaggttccttgatcatttgtgtgagattgagggcatctagcttagattgtaggactgtcggggtgttaagcatatcccaatttaggtcacctgacgatagacagttaacccactgtgcaATCAATTCATATATGGTGTCCAggacacagctgggagctgagtggggtctataacaagcagcaacagcgagggacttatttctggagagatgtatctttaaaagtagaagctcgaactatttgggcatagacctggatagtatgacagaactctgcaggctatctctacagtagattgcaattaTGCCCCCTTTAACAATTCTGtgttgatggaaaatgttgtaattggggatggaaatttctgaatttttggtggccttcctaagcaaGGATTCAgtcacggctaggacatcagggttggagGAATGTGCTAAagtagtgaataaagcaaacttagggaggaggcttctgatgttaacatgcatgaacccaaggcatttacggttgcagaagtcaacaaatgagagcgcctctggacacacagggcctgggttaacctctacatcaccagaggaaccgAGGAGAAGTAGGacgagggtacggctaaaggctataagaactggtcgtctagtgctttgggaacagagaataaaaggagcagaatTCTGGgtgtggtaggatagattcagggcatagtgTACAGAAAAGAGTATGGTAGGGTGTGAGTAAAGTgggggtaaacctaggcattgagtgactatgagagaggttgcatctctggaggcgccagttaagctaggtgcggtctccgcatgtgtggggggtgggacaagggggctatctgaggcatgttgagcggGACTAGGAgctccgcagtaaaataaaacaatgagagctgccctaaacaacagtatacaaggcatattaaCATTAGAgaaaggcataaagcaatcagggggggcagagtagcctagtggttagagcgccgGACTAGTAACAGTAAGGtttcaagatcgaatccccgagctgagaaggtagaaatctgtcgttgTGCCCCTGagcaatgcagttaacccactgttcctaggccgtaattgaaaataagaatttgttcttaactgacttgcctagtaaaataaatatttttaaatcACAAGTGTTTattgggagagctaagacaacaatgggtaaCTGGCAAAGAGGGTCAGttagctacacacagggcctgagtttgaggctggggctgacagataaacaaaatgaagtACTGTGTTAACGAACTATCCAGCAGGCATCAACTGTGTAGCTAAGttatcatagggtccaatgagcagtaatagatgaaacagggagcAGTTCGGTAGTTGATTACTACACTAGGCAAGTGGAAGACATGGCGTTCAGGAAGCTAGCGGGCCGGCGCCTAGCAGATGGATCATCACCAACATCCACAACCCAGAGGCTGGTTGAGAGCACATTGGCTGAATTATATCAGCAGACCAGTTGTGATGGATCG
>TU2487898
ttctcatttacaactgcaacctggccaagataaagcaaagcagtgcgacaaaaacaacacagagttacacatgggataaacaaacgtacagtcaataacacaatagaaaaatctgtatacagtgtgtgcaaatgaagtaaggaggtaaggcaataaataggccaatagtggcgaagtaattaaaaTGTAGCAATTTATgtgtgcaaaatagcagaaaaacaaaaacaaatatggggatgaggtagatagttggttggatgggctatttacagatgggctgtgtacagctgcagcaatcagtaagctgctctgacagctgacgcttaaagttagtgagagagatataAGTCACCaactttagtgatttttgcaattcattccagtcattggcagcagagaactggaaggaaaggctgccaaacgaggtgttggctttggggatgaccagtgaaatatacctgctggagtgcgtgctatgggtgggtgttgctatggtgaccagtgagctgagataaggtggagctttacctagcaaagacttatagatgacctggagccagtgggtttggcgacgaatatgtagcgaggaccagccaacgagagcatacaggtcgcagtggtgggtagtatatagggGCTTtcatgacaaaatggatggcactgtgatagactgcatccaatttgctgagtagagtgttggaggctattttgtaaatgacatcgccgaagtcaaggatcggtaggatagtcagttttacgagggtatgtttggcagcatgagtgaaggaggctttgttgcaaaataggaagccgattctagatttaactttggattggaggtgcttaatgtgagcctggaaggagagtttacagtctaatcagacacctaggtatttatagttgtccacatattctaagtcataaccgttcagagtagtgatgctagtcaggtgggcgggtgcgggcagcgatcagttgaagagcatgcatttcgttttacttgcatttaagagcagttggaggccacagaaggagtgttgtatgtcgttgaagctcgtttggaggttgttaacacagtgtccaaaataGGGCCAGAtgtgtacagaatggtgttgtctgcgtaaaggtggatcaaagaatcacccacagcaagagcgacatcattgataaatacagagaaaagagtcggcctgagaattgaaccctgtggcactcccatagagactgccagaggtccggacaacaggccctccgattttacacaatgaactctatctgagaagtagttggtgaactaggcgaggcagtcatttgagaaaccaagactgttgAATCTGCAAATAAGAATATGGTCATTGACAAAATCGAAAGCATTGGCCAGGTCGataaagacggctgcacagtactgtattttattgatggtggttatgatatcgtttagggggtgcagagctgttggccggggttggggtagccaggtggaaagtatggccagccgtagagaaatgcttattgaaattctcgattatcgtggatttatcagtggtgacattgtttcctagtctcagtgcagtgggcagctggtagGAGCTCCtcttattttccatggactttacagtgtcccaaaactttttggaattagttctgcaggatgcaaatttctgtttgaaaaagctagcctttgctttcctgaccgTGTGCATTggctcctgacttccctgaaaatgaACATATCGCGGAAACTATTCAAAGCTAGTGCAGTAtgccacagggtgtttttgtgctggtcaaaggcagtcaagtctggagtgaaccaagggctatatctgttcttagttcaattttttttgaaaggggcatgcttatttaaaatggtgagaaaagcacttttaaagaacaagcAGGCATcttctgacgggatgaggtcaatatccttccaggataccctagccagaggcctgctcgcagaagtcttttagggagcgtttgacagtgatgaggggtggtcgtttgaccgcggacccataacggatgcaggcaatgaggcagtgatcgctgagatcctggttgaaaacagcagaggtgtattggccaggatgatatctatgagggtgcccatgtttacggattgaGGGTTGTaactggtaggttccttgatcatttgtgtgagattgagggcatctagcttagattgtaggactgtcggggtgttaagcatatcccaatttaggtcacctgacgatagacagttaacccactgtgcaATCAATTCATATATGGTGTCCAggacacagctgggagctgagtggggtctataacaagcagcaaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2487897 False 1683 lncRNA 0.47 1 33058769 33060451
TU2487898 True 2330 lncRNA 0.45 1 33060099 33062428

Neighbor

gene id symbol gene type direction distance location
LOC110510107 djc18 coding downstream 612 33040945 ~ 33058157 (-)
trnaa-agc-231 NA coding downstream 38506 33020191 ~ 33020263 (-)
kif20a LOC106563621 coding downstream 39397 33011238 ~ 33019372 (-)
LOC118945287 NA coding downstream 100968 32954859 ~ 32957801 (-)
LOC118945341 NA coding downstream 142545 32905087 ~ 32916224 (-)
ecscr LOC106563624 coding upstream 23 33062451 ~ 33066498 (-)
ppp3ca UBE2D2 coding upstream 4477 33066905 ~ 33205175 (-)
zgc:100829 LOC106563646 coding upstream 264282 33326710 ~ 33390385 (-)
puraa LOC107684715 coding upstream 364191 33426619 ~ 33434693 (-)
LOC110509437 NA coding upstream 553090 33615518 ~ 33617217 (-)
G2176596 NA non-coding downstream 19619 33038944 ~ 33039150 (-)
G2176552 NA non-coding downstream 64901 32993625 ~ 32993868 (-)
G2176550 NA non-coding downstream 67798 32990750 ~ 32990971 (-)
G2176549 NA non-coding downstream 68061 32990421 ~ 32990708 (-)
G2176707 NA non-coding upstream 64119 33126547 ~ 33129922 (-)
G2176709 NA non-coding upstream 67631 33130059 ~ 33133784 (-)
G2176712 NA non-coding upstream 102066 33164494 ~ 33165906 (-)
G2176729 NA non-coding upstream 129943 33192371 ~ 33192615 (-)
G2176730 NA non-coding upstream 130350 33192778 ~ 33193110 (-)
G2176363 NA other downstream 414197 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 625128 32395346 ~ 32433641 (-)
LOC110510065 LOC106603070 other downstream 773286 32282188 ~ 32287263 (-)
G2175969 LOC100194703 other downstream 792680 32263283 ~ 32266089 (-)
LOC110509376 LOC107567170 other downstream 1320534 31736713 ~ 31738259 (-)
G2177695 NA other upstream 448868 33511296 ~ 33512326 (-)
G2177991 cfb other upstream 1059054 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 1276483 34338911 ~ 34342460 (-)
G2178372 NA other upstream 1740763 34792330 ~ 34809382 (-)
G2179862 NA other upstream 2899556 35961984 ~ 35962832 (-)

Expression


Co-expression Network