G2176877


Basic Information

Item Value
gene id G2176877
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33340148 ~ 33354424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2488228
acgggagaaagggagaacaggaaaagagggaggaagaggggtagagagaacgggagaaagggagaacaggaaaagagggaggaagaggggtagagagaacgGGAGAAAGGGAGAACAGGAAAAGAGGGAGGTTGAGGGGTAGAGAGCGGGAGAAAGGGAGAgcaggaaaagagggaggaagaggggtagagagaaggggagaaagggaAAGCACAGAAATAGgtggagatggaatcagggagaatattccatgaataataggtgaggagatggaatcagggagaatattctgtgaataataggtgaggagatggaatcagggaaaatattctgtgaataataggtgaggagatggagtcagggccaatattctgtgaataataggtgaggagatggaatcagggagaatattctgtgaataataggtgaggagatggaatcagggacaatattctgtgaataataggtgaggagatggaatcagggacaatgttctgtgaataataggtgaggagatggaatcagggacaatgttctgtgaataataggtgaggagatggaatcagggacaatattctgtgaataataggtgaggagatggaatcagggacaatgttctgtgaataataggtgaggagatggaatcagggacaatgttctgtgaataataggtgaggagatggaatcagggagaatattctgtgaataataggtgaggagatggaatcagggacaatgttctgtgaataataggtgaggagatggaatcagggacaatgttctgtgaataataggtgaggagatggaatcagggagaatattctgtgaataataggtgaggagatggaatcagggacaatgttctgtgaataataggtgaggagatggaatcagggacaatgttctgtgaataataggtgaggagatggaatcagggacaatatttTGTGATAaaaaggtgaggagatggaatcagggacaatattctgcgaacaataggtgaggttgatggaatcagggacaatattctgcgaacaataggtgaggttgatggaatcagggagaatattctgtgaataataggtgaggagatggaatcagggacaatattctgcgaacaataggtgaggagatggaatcagggacaatgttctgtgaaattaggtgaggagatggaatcagggacaatgttctgtgaataataggtgaggagatggaatcagggagaatattctgtgagAAATAGGTGGatatggaatcagggagaatattctgtgaataataggtgaggagatggaatcagggacaatgttctgtgaaaaataggtggagatggaatcagggagaatattctgtgaataataggtgaggagatggaatcagggacaatattctgtgaaaaataggtggagatggaatcagggagaatattctgtgaaaaataggtgaggagatggaatcagggacagtgttctgtgaaaaataggtgagaagatggaatcagggacaatgttctgtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2488228 True 1520 lncRNA 0.42 6 33340148 33354424

Neighbor

gene id symbol gene type direction distance location
ppp3ca UBE2D2 coding downstream 143429 33066905 ~ 33205175 (-)
ecscr LOC106563624 coding downstream 273650 33062451 ~ 33066498 (-)
LOC110510107 djc18 coding downstream 281991 33040945 ~ 33058157 (-)
trnaa-agc-231 NA coding downstream 319885 33020191 ~ 33020263 (-)
kif20a LOC106563621 coding downstream 320776 33011238 ~ 33019372 (-)
puraa LOC107684715 coding upstream 72195 33426619 ~ 33434693 (-)
LOC110509437 NA coding upstream 261094 33615518 ~ 33617217 (-)
slc22a6l s22a6 coding upstream 265619 33620043 ~ 33627271 (-)
pygma LOC106563660 coding upstream 283713 33638137 ~ 33651127 (-)
LOC118945276 NA coding upstream 737885 34092309 ~ 34093015 (-)
G2176845 NA non-coding downstream 14575 33325302 ~ 33325573 (-)
G2176841 NA non-coding downstream 24364 33315458 ~ 33315784 (-)
G2176838 NA non-coding downstream 26167 33313662 ~ 33313981 (-)
G2176833 NA non-coding downstream 31348 33308477 ~ 33308800 (-)
G2176824 NA non-coding downstream 35513 33304391 ~ 33304635 (-)
G2176894 NA non-coding upstream 27581 33382005 ~ 33383870 (-)
G2176909 NA non-coding upstream 57835 33412259 ~ 33412489 (-)
G2176913 NA non-coding upstream 60771 33415195 ~ 33415419 (-)
G2176918 NA non-coding upstream 64589 33419013 ~ 33419605 (-)
G2177667 NA non-coding upstream 104129 33458553 ~ 33459092 (-)
G2176363 NA other downstream 695576 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 906507 32395346 ~ 32433641 (-)
LOC110510065 LOC106603070 other downstream 1054665 32282188 ~ 32287263 (-)
G2175969 LOC100194703 other downstream 1074059 32263283 ~ 32266089 (-)
LOC110509376 LOC107567170 other downstream 1601913 31736713 ~ 31738259 (-)
G2177695 NA other upstream 156872 33511296 ~ 33512326 (-)
G2177991 cfb other upstream 767058 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 984487 34338911 ~ 34342460 (-)
G2178372 NA other upstream 1448767 34792330 ~ 34809382 (-)
G2179862 NA other upstream 2607560 35961984 ~ 35962832 (-)

Expression


Co-expression Network