G2177830


Basic Information

Item Value
gene id G2177830
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33762164 ~ 33764067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2489302
taagcctctgtaattacaacacatacagtaggcctctaattacaacacatacagtagcactctgtacctctaattacaacacatgcaGTAACTATCTgtacctctaattacaacacatacagtaggcctctctaattacaacacatacagtaggactctgtaattacaacacatacagtaggcctctaattacaacacatacagtaggcctctctaattacaacacatacagtaggcctctctaattacaacacatacagtaggactctctaattacaacacatacagtagaactctgtaattacaacacatacagtaggcctctctaattacaacacatacagtaggcgtctaattacaacacatacagtagaactctgtaattacaacacatacagtaggcgtctaattacaacacatacagtaggactctgtaattacaacacatagagtaggactctgtaattacaacacatacagtaggcctctgtaattacaacaaagtgtcggcctctaattacaacacatacagtaggactctgtaattacaacatgtacagtaggcctctaattacaacacatacagtagacctctctaattacaacacatacagtaggactctgtaattacaacacatacagtaggactctgtaattacaacacatagagtagaactctgtaattacaacacatacagtaggcgtctaattacaacacatacagtaggtctctaATTAAaagacatacagtaggactctgtaattacaacacatacagtaggcctctgtaattacaacacagtgtcggcctctaattacaacacatacagtaggactctgtaattacaacatgtacagtaggcctctaattacaacacatacagtaggactctgtaattacaacacatacagtaggcctctaattacaacacagtaggactctgtaattacaacacatacagtaggcctctctaattacaacacatacagtagacctctctaattacaacacatacagtaggactctgtaattacaacacatacagtaggcctctctaattacaacacatacagtaggactctgtaattacaacacatagagtagaactctgtaattacaacacatacagtaggcgtctaattacaacacatacagtaggtctctattacaagacatacagtaggactctgtaattacaacacatacagtaggactctgtaattacaacacatacagtaagcctctgtaattacaacacatacagtaggcctctaattacaacacatacagtagcactctgtacctctaattacaacacatgcaGTAACTCTCTgtacctctaattacaacacatacagtaggcctctaattacaacacatacagtaggcctctctaattacaacacatacagtaggcctctctaattacaacacatacagtaggcctctctaattacaacacatacagtagaactctgtaattacaacacatacagtaggcgtctaattacaacacatacagtaggactctgtaattacaacacatagagtaggactctgtaattacaacacatacagtaggcctctgtaattacaacacagtgtcggcctctaattacaacacatacagtaggactctgtaattacaacatgtacagtaggcctctaattacaacacatacagtaggcctctaattacaacacagtaggactctgtaattacaacacatacagtaggactctctaattacaacacatacagtaagcctctctaattacaacacatacagtagacctctctaattacaacacacacagtaggactctgtaattacaacacatacagtaggcctctctaattacaacacatacagtaggactctgtaattacaacacatagagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2489302 True 1904 lncRNA 0.37 1 33762164 33764067

Neighbor

gene id symbol gene type direction distance location
pygma LOC106563660 coding downstream 111037 33638137 ~ 33651127 (-)
slc22a6l s22a6 coding downstream 134893 33620043 ~ 33627271 (-)
LOC110509437 NA coding downstream 144947 33615518 ~ 33617217 (-)
puraa LOC107684715 coding downstream 327471 33426619 ~ 33434693 (-)
zgc:100829 LOC106563646 coding downstream 371779 33326710 ~ 33390385 (-)
LOC118945276 NA coding upstream 328242 34092309 ~ 34093015 (-)
si:dkeyp-50d11.2 LOC106563699 coding upstream 400117 34164184 ~ 34171975 (-)
LOC110510130 LOC106563702 coding upstream 454566 34218633 ~ 34226881 (-)
LOC110510131 dpp3 coding upstream 471609 34235676 ~ 34250665 (-)
il2rc2 il2rc2 coding upstream 493749 34257816 ~ 34268485 (-)
G2177822 NA non-coding downstream 13278 33748668 ~ 33748886 (-)
G2177820 NA non-coding downstream 15537 33746228 ~ 33746627 (-)
G2177816 LOC106563664 non-coding downstream 20325 33740716 ~ 33741839 (-)
G2177781 NA non-coding downstream 87981 33662387 ~ 33674183 (-)
G2177757 NA non-coding downstream 151878 33608940 ~ 33610286 (-)
G2177832 NA non-coding upstream 2443 33766510 ~ 33766721 (-)
G2177834 NA non-coding upstream 9594 33773661 ~ 33774693 (-)
G2177836 NA non-coding upstream 25322 33789389 ~ 33789605 (-)
G2177844 NA non-coding upstream 53213 33817280 ~ 33817533 (-)
G2177848 NA non-coding upstream 56488 33820555 ~ 33820789 (-)
G2177695 NA other downstream 249838 33511296 ~ 33512326 (-)
G2176363 NA other downstream 1117592 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 1328523 32395346 ~ 32433641 (-)
LOC110510065 LOC106603070 other downstream 1476681 32282188 ~ 32287263 (-)
G2175969 LOC100194703 other downstream 1496075 32263283 ~ 32266089 (-)
G2177991 cfb other upstream 357415 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 574844 34338911 ~ 34342460 (-)
G2178372 NA other upstream 1039124 34792330 ~ 34809382 (-)
G2179862 NA other upstream 2197917 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 2740406 36499597 ~ 36596534 (-)

Expression


Co-expression Network