XLOC_004065 (rab7a)


Basic Information

Item Value
gene id XLOC_004065
gene name rab7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 16176603 ~ 16215470 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007754
AATCAAAACAGTTTCCCATAGTTAGGAAAAGACTTTATAAACCTTCTAAcatcaacaattgcaaaaattgCAAATTAGTGTAACTGCATTGCCAAAATAAGTGTACTAGGAACTCTGGGCATTGCTTACAAAATGAATTATTAgaatcaatatatttttaaatctcacTAAGAGAGTATTCACTGGGTAGAAGAGCCTCTTTTAGGGCGTATCTTCTGGGCGGGCATACGCAATGACGCCACGTGCGTGATGACATCGCTGGCTATCACAGGGTTGTTTTGGAGGAAGTTAAAGCAGATCCTGaaacagaaagagaaaaaaagaaccgTCAGTTAACAGGGGGCAACAACGGTTACAGCGCCCGTATCGGCTCGTGTAAGGGCACGGTAGCAGTTTAGCTTACAGGCTACAGCACAGCACAAAAACAGACTGATATTCGCTAGATCTCCTGCTTTATAAACCAGCTCTGACACTATGACATCAAGGAAGAAAGTTCTTCTGAAGGTGATCATTCTTGGAGATTCCGGGGTTGGAAAAACATCTCTAATGAACCAGTATGTGAATAAAAAGTTCAGTAACCAGTATAAAGCCACTATAGGAGCAGATTTCCTGACAAAAGAAGTGATGGTTGACGACCGGCTTGTCACAATGCAGATATGGGACACAGCAGGTCAGGAGCGGTTTCAGTCTCTGGGTGTTGCTTTCTATCGTGGTGCTGACTGCTGCGTCCTGGTGTTTGACGTCACTGCCCCGAACACCTTCAAGACACTGGACAGCTGGAGGGATGAGTTTCTGATCCAGGCCAGTCCTCGAGACCCAGAAAATTTCCCTTTCGTGGTGCTGGGCAACAAAATCGATCTGGAGAATAGACAGGTAACAACTAAGCGAGCACAAGCTTGGTGTCAGAGTAAGAACAACATCCCATATTTTGAGACCAGTGCAAAGGAGGCCATCAACGTAGAGCAGGCATTCCAGACCATCGCGCGCAATgcactcaaacaggaaaCTGAAGTGGAGTTATACAACGAGTTCCCCGAGCCAATTAAACTAGACCGGAACGATAGAGCCAAACCATCAGCAGAGACCTGTAGCTGCTGAGGACCTCCAGGGGGCGCAACATTTCACCCTCAGCCTCTCTGGCCTCGTCTCTGCCTCATTCCCTCCTCCtcactctcattctctctcttgcGTTCTTTCTTTcaccccaacccccccccccccctcccccttcCCCCAGTTCTTCTTCATCGCCTTCCCACCCTCTACTTGATATAATCACTGGCCTTTGTAGACGAGCAGACTTCCTCTCATTCAGTATCCCACACAGTTCTTATTCACAGCCTTagacacaacatacacacacatatgctcaAGAGGCTCAATCTGGCACCAATTTCATACACAAATCCACCACTTCTGCAAAATCGCCACCTCCCCCACGTTAAAAAAAGTCCTACTCAAACTTTTCACAACACTTGAATGGCTCTTGAGACTTTTTATATGTATGTCACAATGAAATTGGCAAAGTGTGATGTGAACGCTGAAAGATGGAGGTGTATAAGAGCATTAAAGCCGAATGTTGGTACCAGAAATACCGCAACGATCAATTGCTTCTTCATTTTTGCTTGAAATCGAAAGCCAGCCTGGTGTAAAGCATGCTACATTTGCATCTCAATTTCTCGAACCTGAAAACGCTCCTGGGTTTGCGAGGTCCCGACGCACTGGAGGTCTAAACACTGCCCCCGCTGTTACATCTGAGAACTGCAGTCAGTTCATCCAGTGTCCTTAAAATGGAATCATCCTACTTAACCATGTGATGGGAAACTTAGATATTATATTACAATTCATACTATTATGACAATTAGTATTTCgatatttgttttatctttaatcCTCATGTCGGCATGACGAATCACCGCGAGTCTGCCATGAGCAAGTAGTGGCGTAGGCCATTTCTTcacgtttgttttttttgtttctttcataTCTTGCCCGGACTCTATCAGTACCTCAGGACGGTAGAGGACTTAAGTGCTCAGTATCACTCGGATATTTTCCTGTCtgtttgttcattattattgtaattattattattattattattattatctgtgtcgcattatatacaaatacacacaactAGACAACATTGGGGAAAACTGAATTGTTCATGACATttaatgaaacaaaatgcacagcataTACATTGTTCAAGATTAATGTATTTCAAAGtaataatggaaataaaattaaattgttgaATAATTCCGTTGTGCGCTGTTTGTTTGTGAAATAACCCAATAAAATTGATGAATGTGAATTTTATTTGCATCTTATATAAAATCGTGAAAACAGAACCATGTCAAAAGTGCTTACCTTGTTTACCAGATACATTTAACCATTGAGAAGAGATATAACATCTATTGTATTGCAAGAAACTTTAACTAAGTGTTTAAGTCCTTGGTTTCTTACTAGAACTCGTTCCCATCAGCCATTGCTGTAGAGGGCCAGTCGGCTTGTTCTGCTTCTCTGCTGCAGGCTTTTCTTCAGGTCCTTTATCTGAAGTATCTTCATCAGGACTCTTCCTCTTAGTTGGCGAAGCTGTTTTCAGCCAGCTCATCATCATTTTACTGCTGGCTGTGGGTTTAGTGCTCTGGACATGACAGAAGGCTGAAGTCAGTATTTGTacgaattaatgaaataaatttgattaaactattagTATGACCATATTTTAACCGTCacccacagaagaaaaaaatagtagattttaataataaaaaacaacaacgtgCAACTGAAAAGCCAGCCTTAAATTGATTTGTTTTCATAGGATTGGTAtgtttacgttagattaacaacaaagcaatagcgtcagctgcagcagTGGCGGTATGAGTGGCGGTCTCCATAGTTAAACCAAgaatacatagatatatacactagatgtcgcctggcctattgttgtctattggacggaatgcgtcaatagcgccaccatcttgctacagggtagcgctcctttgaaatcaATGCGGGACCAAGgaacagtggaggactgtggccatgcaaagccagagatatacacataaacacgtatatctgtgatcgggagttttcctggatgtaagtatgtaatttttttttctaattacgaaaattagaattttacataacttttctacattgatggatcagtgaccgcacgggcatgcctgacaaaaagcttgtgtttgtgtgtacagaaatgtactattcaccctccctgttaaatttaatctaatcatgtcctgaaacacacctcctctcctgctttcacttctcatactgacggagagagcgattcgtttgtgaatgaatcaccCAAACGAtaaacgttacctgattagcacaaaagttccgaacatacaaaaacagaaaaaaacataatattacatatgaaatgttctgcctttgtgctttgttttatttgtttgctcgttacttcacccgtagacagcgctaaagtacctcatcttcacgtaataacactgtcttgactagtgcggttgaatgacatttgtcctgggagcactgtaccaatgtggcggcgctattgacgcatgctcagggtccctatgcgatatctagtgtatatatctatgccaagaatagacttgtgctaaaaacattgtgtccaccagtctctttagttgaggttaatattaaattaaacaaattaataaaagactataaaacgatatggttgttagactgttacactttttttgttatcaatatgctcatgtttatataggcatattgtgtgtgcaacgtttgtatatttataaccacctcggCTGAatttgggggtcgcaagtcactggcattgttatttcaggggtcgcaggctgaaaagtttaggaacccctgctctacagtatgctattatttcatttttacagcTCTAGATTACGTTGAAGagcattatttcatttatattttaactcATCAGACACTGTACTTTAACTTAATGTtattaaatcactttttaaaatttaattggaCAGACTTTCATCTTTGACCAATATATCTTTTAAAACTTTGAGGACAAATTAAAGTGATTTATAAAGTGCTGCTATTCTAAAATAGACAAGTGTTTCACCTTCTTGATCGTGGGGTCCACAGGCTGCAGACATTCTGGAGAGTTATTGCGCGAATTGTTGACCAATGAGGAGACGGGGTGAAAGGTCAGACAAGACTTCGGTTGGAGCAATTTTATAGCTTCCAGTGACTTCACTTCTCCGAAATCCAACCACCGTCTTACCTCATCCTCTCCATCCAGAACTGCCGGCATCCTGTTACAAAACGCATCAAGTCAAGACTCAAGGATAGTCCGCTGTTTCAACATAAGAAAAACTCCATGAGACATCATGTTTATGTGCTCCACCTGTCATGGATGCTCTGAAGGTTTGGAGAAGCGTCTACGGTAATGACTGTGTAAGTGTACAGAGTCTCTCCACCACAAGGAGGAGTCCAGGAGTCAAACAGCCCTGCTATTGTAAGCAGACGCCACCCAGTCCAGTCACTGGTGTCTAGATCACTCTGTGGACAAGAGAAggaaaaattatttaacaaaagtgaCAGTAATTACTTTCATAATGGtaattctctttcaaataaaagTGCTGTTTGATTCTCGACTCCTAATTACAGAGTCGGTGGAATCGACTCCATTTACTTTCACTTAAAATAGCGCAAGAATTAAACAT
>TCONS_00007755
gTCAGTTAACAGGGGGCAACAACGGTTACAGCGCCCGTATCGGTATTCCCGAATCCGGATTAATTTACTCATACACTCGCCAAAAACGATCCAGTTTTCAACTGACGACAGAAGCTgaagttattgtttgtttttttcctcatAAACATCAGGCTCGTGTAAGGGCACGGTAGCAGTTTAGCTTACAGGCTACAGCACAGCACAAAAACAGACTGATATTCGCTAGATCTCCTGCTTTATAAACCAGCTCTGACACTATGACATCAAGGAAGAAAGTTCTTCTGAAGGTGATCATTCTTGGAGATTCCGGGGTTGGAAAAACATCTCTAATGAACCAGTATGTGAATAAAAAGTTCAGTAACCAGTATAAAGCCACTATAGGAGCAGATTTCCTGACAAAAGAAGTGATGGTTGACGACCGGCTTGTCACAATGCAGATATGGGACACAGCAGGTCAGGAGCGGTTTCAGTCTCTGGGTGTTGCTTTCTATCGTGGTGCTGACTGCTGCGTCCTGGTGTTTGACGTCACTGCCCCGAACACCTTCAAGACACTGGACAGCTGGAGGGATGAGTTTCTGATCCAGGCCAGTCCTCGAGACCCAGAAAATTTCCCTTTCGTGGTGCTGGGCAACAAAATCGATCTGGAGAATAGACAGGTAACAACTAAGCGAGCACAAGCTTGGTGTCAGAGTAAGAACAACATCCCATATTTTGAGACCAGTGCAAAGGAGGCCATCAACGTAGAGCAGGCATTCCAGACCATCGCGCGCAATgcactcaaacaggaaaCTGAAGTGGAGTTATACAACGAGTTCCCCGAGCCAATTAAACTAGACCGGAACGATAGAGCCAAACCATCAGCAGAGACCTGTAGCTGCTGAGGACCTCCAGGGGGCGCAACATTTCACCCTCAGCCTCTCTGGCCTCGTCTCTGCCTCATTCCCTCCTCCtcactctcattctctctcttgcGTTCTTTCTTTcaccccaacccccccccccccctcccccttcCCCCAGTTCTTCTTCATCGCCTTCCCACCCTCTACTTGATATAATCACTGGCCTTTGTAGACGAGCAGACTTCCTCTCATTCAGTATCCCACACAGTTCTTATTCACAGCCTTagacacaacatacacacacatatgctcaAGAGGCTCAATCTGGCACCAATTTCATACACAAATCCACCACTTCTGCAAAATCGCCACCTCCCCCACGTTAAAAAAAGTCCTACTCAAACTTTTCACAACACTTGAATGGCTCTTGAGACTTTTTATATGTATGTCACAATGAAATTGGCAAAGTGTGATGTGAACGCTGAAAGATGGAGGTGTATAAGAGCATTAAAGCCGAATGTTGGTACCAGAAATACCGCAACGATCAATTGCTTCTTCATTTTTGCTTGAAATCGAAAGCCAGCCTGGTGTAAAGCATGCTACATTTGCATCTCAATTTCTCGAACCTGAAAACGCTCCTGGGTTTGCGAGGTCCCGACGCACTGGAGGTCTAAACACTGCCCCCGCTGTTACATCTGAGAACTGCAGTCAGTTCATCCAGTGTCCTTAAAATGGAATCATCCTACTTAACCATGTGATGGGAAACTTAGATATTATATTACAATTCATACTATTATGACAATTAGTATTTCgatatttgttttatctttaatcCTCATGTCGGCATGACGAATCACCGCGAGTCTGCCATGAGCAAGTAGTGGCGTAGGCCATTTCTTcacgtttgttttttttgtttctttcataTCTTGCCCGGACTCTATCAGTACCTCAGGACGGTAGAGGACTTAAGTGCTCAGTATCACTCGGATATTTTCCTGTCtgtttgttcattattattgtaattattattattattattattattatctgtgtcgcattatatacaaatacacacaactAGACAACATTGGGGAAAACTGAATTGTTCATGACATttaatgaaacaaaatgcacagcataTACATTGTTCAAGATTAATGTATTTCAAAGtaataatggaaataaaattaaattgttgaATAA
>TCONS_00007756
AAAAAAGACGCCTCCCATCGCAAAAAGCTTGTTCAGTGTGATCAGCCCCTtgttatgtattaaaatatataaacaatttaattattatatttattattttatatttatttatttttgactatatatatttttcaaaaccatggtatatttttctttttcaggatTTTTTGAAAGTTGAAAACACATTTTGATTGTGcttttacacatttatatacTCAGGTAACAACTAAGCGAGCACAAGCTTGGTGTCAGAGTAAGAACAACATCCCATATTTTGAGACCAGTGCAAAGGAGGCCATCAACGTAGAGCAGGCATTCCAGACCATCGCGCGCAATgcactcaaacaggaaaCTGAAGTGGAGTTATACAACGAGTTCCCCGAGCCAATTAAACTAGACCGGAACGATAGAGCCAAACCATCAGCAGAGACCTGTAGCTGCTGAGGACCTCCAGGGGGCGCAACATTTCACCCTCAGCCTCTCTGGCCTCGTCTCTGCCTCATTCCCTCCTCCtcactctcattctctctcttgcGTTCTTTCTTTcaccccaacccccccccccccctcccccttcCCCCAGTTCTTCTTCATCGCCTTCCCACCCTCTACTTGATATAATCACTGGCCTTTGTAGACGAGCAGACTTCCTCTCATTCAGTATCCCACACAGTTCTTATTCACAGCCTTagacacaacatacacacacatatgctcaAGAGGCTCAATCTGGCACCAATTTCATACA

Function

symbol description
rab7a Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within endosomal transport. Located in late endosome. Is expressed in neural crest. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).

GO:

id name namespace
GO:0016197 endosomal transport biological_process
GO:0090385 phagosome-lysosome fusion biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0005764 lysosome cellular_component
GO:0005770 late endosome cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04145 Phagosome
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04137 Mitophagy - animal
ko05132 Salmonella infection
ko05152 Tuberculosis
ko05146 Amoebiasis
ko04131 Membrane trafficking
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040426-1352 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within endosomal transport. Located in late endosome. Is expressed in neural crest. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000020497

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007754 False 4751 mRNA 0.41 7 16176603 16215470
TCONS_00007755 False 2048 mRNA 0.44 6 16179089 16215143
TCONS_00007756 True 748 lncRNA 0.43 2 16179952 16181688

Neighbor

gene id symbol gene type direction distance location
XLOC_004064 arpc4l coding downstream 24203 16139897 ~ 16152400 (-)
XLOC_004062 NA coding downstream 56313 16120012 ~ 16120290 (-)
XLOC_004061 rpf1 coding downstream 60799 16094661 ~ 16115804 (-)
XLOC_004060 SPATA1 coding downstream 83581 16084581 ~ 16093022 (-)
XLOC_004059 CR848761.1 coding downstream 118296 16058191 ~ 16058307 (-)
XLOC_004066 lrig1 coding upstream 114306 16329776 ~ 16395956 (-)
XLOC_004067 AL844563.2 coding upstream 428927 16644397 ~ 16644513 (-)
XLOC_004068 AL844563.1 coding upstream 453748 16669218 ~ 16675164 (-)
XLOC_004069 suclg2 coding upstream 522709 16738179 ~ 16975190 (-)
XLOC_004070 NA coding upstream 865952 17081422 ~ 17091195 (-)
XLOC_004063 CR854846.1 misc downstream 48925 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 3484912 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 3554836 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 3585307 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 3663341 12512966 ~ 12513262 (-)
XLOC_004057 FP003590.1 non-coding downstream 330090 15845588 ~ 15846513 (-)
XLOC_004055 FP016142.1 non-coding downstream 367584 15806392 ~ 15809019 (-)
XLOC_004054 FP016142.7 non-coding downstream 372966 15802450 ~ 15803637 (-)
XLOC_004071 CR769769.2 non-coding upstream 878283 17093753 ~ 17097933 (-)
XLOC_004072 CR769769.3 non-coding upstream 928839 17144309 ~ 17147461 (-)

Expression


Co-expression Network