G2178219 (LOC106563694)


Basic Information

Item Value
gene id G2178219
gene name LOC106563694
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34452660 ~ 34455530 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2489739
ACTGAGTACTACCGGACTCCCTGTTTGATGGAGTAGTTTAGGTGAGTTTTATCCGCAAACCAATAAACCCCTTTATAGTGAATGTGTTCATTAACCCCCCTTGGTTTTATGTGAGAAGTACAGAGTGAATGGTTAATTAAGCTACGTTTGAAATGATGTGACTCATACGCATGGCTGGATATCTACATTACAGTACAGGTACTACAGGCTCACATTGACAAAACCACTAAAATACAACACTAAAATGCCCGTAATAGTGAGAGATATCAACATCATATAAAGCTGTTATCATTTTTTATTGATAGTTCTTCCTATGAGGTATTCCAGTTTCTTCTTTGCTTTGGTCATCAGCCTTTCAATCTGGACAGCCATCAACAGCTTTGCTCTATTGAACTTTGCAGTCCCTCCTTCCTCGTCTTTCTTCTGCTGGGGGAATGTACTCAGCCTCAAGGGTAACATGCGTTCTTTACTCTCCCACCGGGAGACCTACATCTTGGGGTTTGGGGTTCATGAGGATCAAGGGGAGCTCCACCTGTACGTCACTGGCTGTGAGACCTCCCAACAAGCCTCCTGAAGACACCATCAAGTTGACCTTGATTTTGTAGGAGACCAAGATTCCCAACACTTCTTTATCCATACCGTCTCTCATAATAGTGTTGGAGGCTAGGTTTGTGTCCTCATCCTTCAGTCTGCCGTCCAGCGCCAGACCGCGCTTCTCCTTGTTGTCGGCCAGTAGGGGGATGATGGTGAGGGATTTATCAAATGTGCTATTGGCATCTATTGTCTCTCCAAACTCTTGACAAAGTACGGTTTTGGTGTATTTGTCCGCGGAGTAGAGCACCACATCTGTAGTCTGGTCAACTGTGACTTTAATTTTTGTCACTGTTTTGGTGGTTTCATTCTTGACTTTGACGTTGACATTGATCGGATCTCCATGGTAATAGAGCTCCTTATCCAGAGAGGCCTCCAGGTGGACAGGCTTGTCAGACATCATGAAGCTCTTGCAGATGTCAGCCTTGGGACCAGGAGCACCAGTTGCATCTGGAGCAAACTGGATCTTACGGACGATCAGACGGGCAGTGTCTTTCTTGTCAAGTTTCTCTTCTGGGTCTGCCACATCTGAAATGTAGGTCTTCACTTCAAAGTCCACACCGCAAGCCTTTCCAGCATCATCTGGTCCTGGCTGGAGTGTGACAGAGCAGGGAAGGTTTACGGGAATGTCGAAAGTGAAGGCATGGCCCTGCTCTCCTGCCTTCTTGAGCAGGCAGTCATGCATGGGAGTGAGGGTGGGTTTGTGGTCAGCAGCAGGGTACAACTGGAGGTGCTTGAACCAGATGTCTTTCCTGAAGGACAGTCCAATGACATCCAGGTCCTCACGGCCATAACGGAAAGCACAGGCCAGCT

Function

NR:

description
arrestin-C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2489739 True 1404 lncRNA 0.47 11 34452660 34455530

Neighbor

gene id symbol gene type direction distance location
LOC110510139 LOC106563695 coding downstream 68076 34362509 ~ 34384584 (-)
LOC110510135 LOC106563696 coding downstream 110200 34338911 ~ 34342460 (-)
il2rc2 il2rc2 coding downstream 184175 34257816 ~ 34268485 (-)
LOC110510131 dpp3 coding downstream 201995 34235676 ~ 34250665 (-)
LOC110510130 LOC106563702 coding downstream 225779 34218633 ~ 34226881 (-)
trnas-gcu-266 NA coding upstream 90774 34546304 ~ 34546385 (-)
hif1al2 LOC106563688 coding upstream 91251 34546781 ~ 34565141 (-)
LOC110510152 LOC106563684 coding upstream 164428 34619958 ~ 34629302 (-)
leap-2b leap-2b coding upstream 228889 34684417 ~ 34685804 (-)
LOC110510156 LOC106563681 coding upstream 260409 34715939 ~ 34727232 (-)
G2178162 NA non-coding downstream 96390 34355971 ~ 34356270 (-)
G2178157 NA non-coding downstream 103507 34348887 ~ 34349153 (-)
G2178155 NA non-coding downstream 108245 34344166 ~ 34344415 (-)
G2178146 NA non-coding downstream 126993 34325439 ~ 34325667 (-)
G2178128 NA non-coding downstream 148526 34303931 ~ 34304134 (-)
G2178229 NA non-coding upstream 13860 34469390 ~ 34469626 (-)
G2178254 NA non-coding upstream 72118 34527648 ~ 34527877 (-)
G2178263 NA non-coding upstream 83760 34539290 ~ 34539733 (-)
G2178090 NA non-coding upstream 116909 34572439 ~ 34573267 (-)
G2178088 NA non-coding upstream 125316 34580846 ~ 34581441 (-)
G2177991 cfb other downstream 305341 34092047 ~ 34216247 (-)
G2177695 NA other downstream 940334 33511296 ~ 33512326 (-)
G2176363 NA other downstream 1808088 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 2019019 32395346 ~ 32433641 (-)
G2178372 NA other upstream 347661 34792330 ~ 34809382 (-)
G2179862 NA other upstream 1506454 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 2048943 36499597 ~ 36596534 (-)
G2180120 NA other upstream 2051010 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 2521624 36975909 ~ 36979761 (-)

Expression


Co-expression Network