G2177470 (LOC106563688)


Basic Information

Item Value
gene id G2177470
gene name LOC106563688
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34552309 ~ 34565130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2488900
ggacatacacaaaatagtccaaattggtgaagtgaaattaaaaaatgtacttgtttaaaaaaatatgtatatattttaaaactggcatatgtattcaccccctttgctatgaagcccctaaataagatctggtgcatccaattaccttcagaagtcacataataagttaaataaagtccacctgtgtgcaatctaagtgtcacataatctgtcacatgatctcagtatatatacacctgttctgaacggccccagagtctgcaacaccactaagcaaggggcaccactaagcaaggggcaccaccaagcaagcggcaccacgaAGAACAAGGAGCttgccaaacaggtcagggacaaagttgtggagaagtacagatcagagttaggttataaaaaaatataagaatctttgaacatcccacggagcaccattaaatccattattttttaaaatgtaaagaatatggcaccacaacaaacctgccaagagactCAAAACTCaaagaccaggcaaggagggcattaatcagagaggcaacaaaagagacttgcagctgtattgctgcaaaaggttgctctacaaagtattgactttggggggtaaatagttatgcacgctcaagttctgtttttttgtcttgtttgtttcacaaaaaaatattttgcatattcaaagtggtaggcatgttgtgtaaatctaATGATACAAATCCCcctaaaatctattttaattccaggttgtaaggctacaaaataggaaaaatggcaAAGGGGTGAATAGTTTCGCAAGCCACAGtacttctgtctgtaataaatcccttttgtggggaaaaactcattctgattggttgggaCTATACCCTCCCAGACCTACCCATTTCTACgcacctgcccagtcatgtgaaattagggcctaatgattttatttcaattgacttatttccttatatgaattgtaaaaatctgtaaaatcattgaaattgttgcatgttgtgtttatatttttgttcagtataatatgaCTGTACCTGGTTGATGCCAGTGTGTGTCCTTATGTCCCCTGTAGTGAAGATAACTTGGCCGTTCTGAGACACCAAGAGCATGAAACCCCCAACAGCAGACTCCAGCACTGTCTCCACAGAGAAAATCCCTGCCATTGGGTATCGCCCTAAATAACACAGAGGACAATGCCTTCTACTATATTTCTAAACCCTTGAACACTCTAAAAGCCTTGACATTCCAAAAACCCAACAGAATGTTGTTACCGTGCATGGTGAAGTGGACTGTGTCAGAGCAGACCCTGGTCTCTGGTGTGACATTGTCTCGATGGTCTAGCAGCGCTCTCAGACGCAGGTAGTCCAGTGTGAGTCTGACGATAGAAGCCTTGTCTATGTGGCCagtcagaccagagggcagagGTAGCCATGCTGCCAGCTCCCCAAacaaacgtctctctctctccctcctactcttaGCTGCAACACGGGACTGGGCCCGCAGCCGCTCCGTACTCACCCTGTGGTACAAGCAGTGTCtcacctgcttctcttctGTCCATTaattctgtccttctgtctctttgTTTTGTGGAGCTTTTGATCACAAGCATCTTCCAGAGAATTTCCTAAATGAGGAAACATTATCCAAAATCTCTGAATGGACACTTGCTAGTAATCACAGACACATGCCAGTCATGCGGTCGCGAGCATTTCGTCCCACTTGTACTTTTGGAGGTTGAACTAGAACAGGTTC

Function

NR:

description
PREDICTED: protein similar-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2488900 True 1752 lncRNA 0.42 2 34552309 34565130

Neighbor

gene id symbol gene type direction distance location
cd248b LOC106563689 coding upstream 7549 34541820 ~ 34544760 (+)
LOC110510145 rab1a coding upstream 30584 34516622 ~ 34521725 (+)
ehbp1l1b LOC100380650 coding upstream 36153 34478463 ~ 34516156 (+)
LOC110510143 LOC106563691 coding upstream 74976 34472567 ~ 34477333 (+)
znrd2 ssa27 coding upstream 80215 34469852 ~ 34472094 (+)
LOC100136033 LOC100136033 coding downstream 16622 34581752 ~ 34586596 (+)
LOC110510150 LOC106563687 coding downstream 26691 34591821 ~ 34596053 (+)
slc7a3a LOC106563685 coding downstream 33696 34598826 ~ 34611290 (+)
LOC118945290 NA coding downstream 70114 34635244 ~ 34638008 (+)
LOC110510153 LOC106563683 coding downstream 73103 34638233 ~ 34661249 (+)
G2177471 NA non-coding upstream 5723 34546072 ~ 34546586 (+)
G2177515 NA non-coding upstream 12552 34539270 ~ 34539757 (+)
G2177507 NA non-coding upstream 55534 34496305 ~ 34496775 (+)
G2177506 NA non-coding upstream 56440 34494614 ~ 34495869 (+)
G2177496 NA non-coding upstream 99659 34452173 ~ 34452650 (+)
G2177476 NA non-coding downstream 15514 34580644 ~ 34581052 (+)
G2177518 NA non-coding downstream 47699 34612829 ~ 34614298 (+)
G2177537 NA non-coding downstream 90313 34655443 ~ 34657869 (+)
G2177532 NA non-coding downstream 97143 34662273 ~ 34662564 (+)
G2177548 NA non-coding downstream 110671 34675801 ~ 34676298 (+)
G2177424 NA other upstream 91540 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 320126 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 416910 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1316774 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2426231 32115629 ~ 32150579 (+)
LOC110510159 LOC106563679 other downstream 237809 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 940718 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1286524 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1347360 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 2113441 36678571 ~ 36680297 (+)

Expression


Co-expression Network