G2177518


Basic Information

Item Value
gene id G2177518
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34612829 ~ 34614298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2488950
tgtacctatgatgaaattactacaggcctctcatctttttaagtgggagaactctcacaattggtggctgactaaatactgttttgccccactgtggcTGGCTGCTGCTGTGTCATCttaatttgatacattttaggCCGTACTGTACTCTTGTACCCCCCCACCCTTCATGTATCTCTGTTTATCTCACTGGAGTTTGTCTTTACAAATCAGAACTACCCTTTTTATATGAACATACTTGAGTTTGAGATCTCTGCCTGCCTCCAATGCTTGAGCTGTCTCTACAGGTGTTTAATAAAGACCAGTACCCTGGGGGTCTATTCAGTGGCTCTGTGTTGAATCTTAAAGGCAGTGACTTTAGTCCTGGTCATGCACTACCACTGATGGAGCTTTAGTTGTAGATTCTTGTGAAAACATATtagcaaatgttttttgttttttttgtttccgTTGAAATTTGTTCTTGGAAGCTTAGCTGTCGAGTTTGCATCATTTTATCTGAACATTATATTCTGTAgaattgttttatatgtagttaTTTTATGCTTTTCAAATTAAGTTAAAGTAATGTTCTTTTATAGATGTTATTGTATTCTTACATGTACAGTTTTTAAAGTACTCTTGACAACCACCTTTAATGATTTACTTTATATAGCAAAATTGTTGCACCACCAAATGATTGAGACTTCAACTTGTGATTCCATTTGCTATTAATCACTAGTTGTGGTGCTGCTTGACCAAAATGCAGTGTGCATTGGAGACACTAGGTCAAGGACATAAGGAATTTGACCAGCAAAATCTGCTCTCTAAATCTGAAGTATATTTGTGCTCATCTGTAAAGACACTGGAATTGGTGAGGATAATTGAGTTCTACGGTTTGTTAAAGGAAAATACCGTACAAAACCTGATGCATtatatgatgcaaaatgcatcataacaactgtatttctgtatttagaAAAATGATATCTAAAGTTAATTGTTGACTTGCAAAAGATGTTGGGCcaatatcaacaatggactaatgaaacaaataccaaaatagtaTTTGTGTGGAGTTTTCCTTTTAAGTGAGTTGTAGTACAGTAATaactaatgtacagtatgtgaatagCTGTATCATATTTGTATAATGCTGAATATTATACAAATGGACACTTATTCAAAGGAGGTGTTTTATACTTGTGCTTCTTAACACACATTTTAACAACCTATTGTTTCTTGAGAACTTGTAAGAATCTCAAAAAGAAACCAGTGCCTGAAAATACCGCCCGCCTCAGATACCAGGGGCTGGTAAACCAAGACTCCTATCAGGCCATAGTAGTGATTGATCAGTACTACTCTAAATGCTGTCACATAAATATGAATGATATTTTTTGTCTTTGGTTTTATATACTGTGAATATATGTCTGTCATGTAGAAATGAGCTGTATTTTCAATGTTGTCTTTTCTAAATAAATGTTTATTATA
>TU2488952
tggtggctgactaaatactgttttgccccactgtggcTGGCTGCTGCTGTGTCATCttaatttgatacattttaggCCGTACTGTACTCTTGTACCCCCCCACCCTTCATGTATCTCTGTTTATCTCACTGGAGTTTGTCTTTACAAATCAGAACTACCCTTTTTATATGAACATACTTGAGTTTGAGATCTCTGCCTGCCTCCAATGCTTGAGCTGTCTCTACAGGTGTTTAATAAAGACCAGTACCCTGGGGGTCTATTCAGTGGCTCTGTGTTGAATCTTAAAGGCAGTGACTTTAGTCCTGGTCATGCACTACCACTGATGGAGCTTTAGTTGTAGATTCTTGTGAAAACATATtagcaaatgttttttgttttttttgtttccgTTGAAATTTGTTCTTGGAAGCTTAGCTGTCGAGTTTGCATCATTTTATCTGAACATTATATTCTGTAgaattgttttatatgtagttaTTTTATGCTTTTCAAATTAAGTTAAAGTAATGTTCTTTTATAGATGTTATTGTATTCTTACATGTACAGTTTTTAAAGTACTCTTGACAACCACCTTTAATGATTTACTTTATATAGCAAAATTGTTGCACCACCAAATGATTGAGACTTCAACTTGTGATTCCATTTGCTATTAATCACTAGTTGTGGTGCTGCTTGACCAAAATGCAGTGTGCATTGGAGACACTAGGTCAAGGACATAAGGAATTTGACCAGCAAAATCTGCTCTCTAAATCTGAAGTATATTTGTGCTCATCTGTAAAGACACTGGAATTGGTGAGGATAATTGAGTTCTACGGTTTGTTAAAGGAAAATACCGTACAAAACCTGATGCATtatatgatgcaaaatgcatcataacaactgtatttctgtatttagaAAAATGATATCTAAAGTTAATTGTTGACTTGCAAAAGATGTTGGGCcaatatcaacaatggactaatgaaacaaataccaaaatagtaTTTGTGTGGAGTTTTCCTTTTAAGTGAGTTGTAGTACAGTAATaactaatgtacagtatgtgaatagCTGTATCATATTTGTATAATGCTGAATATTATACAAATGGACACTTATTCAAAGGAGGTGTTTTATACTTGTGCTTCTTAACACACATTTTAACAACCTATTGTTTCTTGAGAACTTGTAAGAATCTCAAAAAGAAACCAGTGCCTGAAAATACCGCCCGCCTCAGATACCAGGGGCTGGTAAACCAAGACTCCTATCAGGCCATAGTAGTGATTGATCAGTACTACTCTAAATGCTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2488950 False 1470 lncRNA 0.35 1 34612829 34614298
TU2488952 True 1294 lncRNA 0.36 1 34612890 34614183

Neighbor

gene id symbol gene type direction distance location
slc7a3a LOC106563685 coding upstream 1539 34598826 ~ 34611290 (+)
LOC110510150 LOC106563687 coding upstream 16776 34591821 ~ 34596053 (+)
LOC100136033 LOC100136033 coding upstream 26233 34581752 ~ 34586596 (+)
cd248b LOC106563689 coding upstream 68069 34541820 ~ 34544760 (+)
LOC110510145 rab1a coding upstream 91104 34516622 ~ 34521725 (+)
LOC118945290 NA coding downstream 20946 34635244 ~ 34638008 (+)
LOC110510153 LOC106563683 coding downstream 23935 34638233 ~ 34661249 (+)
LOC110510155 LOC106563682 coding downstream 89027 34703325 ~ 34715546 (+)
LOC110510157 LOC106563680 coding downstream 134572 34748870 ~ 34761158 (+)
LOC110510158 LOC106563717 coding downstream 149384 34763682 ~ 34782858 (+)
G2177476 NA non-coding upstream 31777 34580644 ~ 34581052 (+)
G2177470 LOC106563688 non-coding upstream 47699 34552309 ~ 34565130 (+)
G2177471 NA non-coding upstream 66243 34546072 ~ 34546586 (+)
G2177515 NA non-coding upstream 73072 34539270 ~ 34539757 (+)
G2177507 NA non-coding upstream 116054 34496305 ~ 34496775 (+)
G2177537 NA non-coding downstream 41145 34655443 ~ 34657869 (+)
G2177532 NA non-coding downstream 47975 34662273 ~ 34662564 (+)
G2177548 NA non-coding downstream 61503 34675801 ~ 34676298 (+)
G2177606 NA non-coding downstream 148499 34762797 ~ 34763001 (+)
G2177614 NA non-coding downstream 155503 34769801 ~ 34770015 (+)
G2177424 NA other upstream 152060 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 380646 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 477430 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1377294 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2486751 32115629 ~ 32150579 (+)
LOC110510159 LOC106563679 other downstream 188641 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 891550 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1237356 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1298192 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 2064273 36678571 ~ 36680297 (+)

Expression


Co-expression Network