G2178283


Basic Information

Item Value
gene id G2178283
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34612840 ~ 34614255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2489806
CTCATTTCTACATGACAGACATATATTCACAGTATATAAAACCAAAGACAAAAAATATCATTCATATTTATGTGACAGCATTTAGAGTAGTACTGATCAATCACTACTATGGCCTGATAGGAGTCTTGGTTTACCAGCCCCTGGTATCTGAGGCGGGCGGTATTTTCAGGCACTGGTTTCTTTTTGAGATTCTTACAAGTTCTCAAGAAACAATAGGTTGTTAAAATGTGTGTTAAGAAGCACAAGTATAAAACACCTCCTTTGAATAAGTGTCCATTTGTATAATATTCAGCATTATACAAATATGATACAGctattcacatactgtacattagttATTACTGTACTACAACTCACTTAAAAGGAAAACTCCACACAAAtactattttggtatttgtttcattagtccattgttgatattgGCCCAACATCTTTTGCAAGTCAACAATTAACTTTAGATATCATTTTtctaaatacagaaatacagttgttatgatgcattttgcatcatataATGCATCAGGTTTTGTACGGTATTTTCCTTTAACAAACCGTAGAACTCAATTATCCTCACCAATTCCAGTGTCTTTACAGATGAGCACAAATATACTTCAGATTTAGAGAGCAGATTTTGCTGGTCAAATTCCTTATGTCCTTGACCTAGTGTCTCCAATGCACACTGCATTTTGGTCAAGCAGCACCACAACTAGTGATTAATAGCAAATGGAATCACAAGTTGAAGTCTCAATCATTTGGTGGTGCAACAATTTTGCTATATAAAGTAAATCATTAAAGGTGGTTGTCAAGAGTACTTTAAAAACTGTACATGTAAGAATACAATAACATCTATAAAAGAACATTACTTTAACTTAATTTGAAAAGCATAAAAtaactacatataaaacaattcTACAGAATATAATGTTCAGATAAAATGATGCAAACTCGACAGCTAAGCTTCCAAGAACAAATTTCAAcggaaacaaaaaaaacaaaaaacatttgctaATATGTTTTCACAAGAATCTACAACTAAAGCTCCATCAGTGGTAGTGCATGACCAGGACTAAAGTCACTGCCTTTAAGATTCAACACAGAGCCACTGAATAGACCCCCAGGGTACTGGTCTTTATTAAACACCTGTAGAGACAGCTCAAGCATTGGAGGCAGGCAGAGATCTCAAACTCAAGTATGTTCATATAAAAAGGGTAGTTCTGATTTGTAAAGACAAACTCCAGTGAGATAAACAGAGATACATGAAGGGTGGGGGGGTACAAGAGTACAGTACGGcctaaaatgtatcaaattaaGATGACACAGCAGCAGCCAgccacagtggggcaaaacagtatttagtcagccaccaattgtgagagttctcccacttaaaaagatgagaggcctgtagtaatttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2489806 True 1416 lncRNA 0.35 1 34612840 34614255

Neighbor

gene id symbol gene type direction distance location
hif1al2 LOC106563688 coding downstream 47699 34546781 ~ 34565141 (-)
trnas-gcu-266 NA coding downstream 66455 34546304 ~ 34546385 (-)
LOC110510139 LOC106563695 coding downstream 228256 34362509 ~ 34384584 (-)
LOC110510135 LOC106563696 coding downstream 270380 34338911 ~ 34342460 (-)
il2rc2 il2rc2 coding downstream 344355 34257816 ~ 34268485 (-)
LOC110510152 LOC106563684 coding upstream 5703 34619958 ~ 34629302 (-)
leap-2b leap-2b coding upstream 70164 34684417 ~ 34685804 (-)
LOC110510156 LOC106563681 coding upstream 101684 34715939 ~ 34727232 (-)
LOC110510161 LOC106563678 coding upstream 195616 34809871 ~ 34814939 (-)
LOC110510165 atg4a coding upstream 236941 34851196 ~ 34862503 (-)
G2178276 NA non-coding downstream 23212 34589170 ~ 34589628 (-)
G2178274 NA non-coding downstream 24905 34587612 ~ 34587935 (-)
G2178088 NA non-coding downstream 31399 34580846 ~ 34581441 (-)
G2178090 NA non-coding downstream 39573 34572439 ~ 34573267 (-)
G2178263 NA non-coding downstream 73107 34539290 ~ 34539733 (-)
G2178312 NA non-coding upstream 39823 34654078 ~ 34654620 (-)
G2178313 NA non-coding upstream 43920 34658175 ~ 34661244 (-)
G2178326 NA non-coding upstream 64329 34678584 ~ 34678907 (-)
G2178362 NA non-coding upstream 131902 34746157 ~ 34746483 (-)
G2177991 cfb other downstream 465521 34092047 ~ 34216247 (-)
G2177695 NA other downstream 1100514 33511296 ~ 33512326 (-)
G2176363 NA other downstream 1968268 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 2179199 32395346 ~ 32433641 (-)
G2178372 NA other upstream 188936 34792330 ~ 34809382 (-)
G2179862 NA other upstream 1347729 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 1890218 36499597 ~ 36596534 (-)
G2180120 NA other upstream 1892285 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 2362899 36975909 ~ 36979761 (-)

Expression


Co-expression Network