G2178313


Basic Information

Item Value
gene id G2178313
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34658175 ~ 34661244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2489837
AAAATATGCCAATTTATTCTATTTTATTCCAAAAACAACAACCTCTGCATTTAAAATAAGAACCAATTGTTTATAACAATGTAACTTATCATTGACAATacagtgtattatgtattatcaATCCATTTGATGGACAAAATCAAAAGGAATGGGCCCTCACTCCTCAAACAGGACATCCTGGACAATGCTTTCATCACAGGAAAAATGACAGtttccagacagacagtatggtATACAGTAGGTAATACTGTTCTCACATTGtgaaatatgcatatattatatataaccaGAGAACGTCAGGCAAAAAGTGAAAACGCATGTTGTTGACATCTTTCAGTGGCCAAAAGATATGGGAGTGAGATTTCCCACTGCACACACAAAGGAAGCTTATTGGCGAAGAATGATGTGGTCCAATGACAAGGGGACAAGAGATCCTTAGAGATGTCCAAAAATGTTGTCAGAGTACTCAAAAAAAGAGCAAGCATTcaacaaatgtattgaaaatagcAACGCTAAAGAGGGGTTTTGCAGACTAATGTCTAGCTAGCTAGGTGATGCATGTCATTCATGTTGTTTCACAAACGTGTGGTCTCATAACTGATTTGATAGAGCTTCCGAATTGCATTTCGAATGCAACACAGACGTCTGGATATCTGGTGGGACAAACATTTATGAATTCCAATGGATGCTTCTGTAAAGAGGTAAGTAAAATATTGTTTTGCAAACACACGGTAAGTGCAATTTCACACATGATCATGCTTTTTACCGGGCACACAAGTCAATAAAAAGACAACAATAATCATGCATAAAGACTTGTGTCTCTGAAATCAAATTCCTTCAAATTGGATATCAGCAATGTGACCTTGAGAAAAGCTGCGCTTGATGACTTTGGTGCAAAATGTTCCTGTACGGACTGAGAGGACAGTGCCCACTGCCACAATGAAGACACTCTTGGTAGACAAGTTGTGATACTGTTGAACCCAACCCCCATCCCTCATCAAGATGTAGACAAACATTACAGACGAACAGCCCATCACATCTCCAAACACAATAACCCCACCACAGACACAGCTATAACAACCCATGGCATCTCCATGGGCCATCACTTACAGAGAACACATCAAAAACAcacgaggttatatacagaggaCAGCAGAACGGTCAGAATTGGTCTATGGGACTGCACAAACTTGCATGAAACCATTTAACTGACACAGAGGACATTGAGACTGAACTACAACGTTTCTAATAACATCTACACAGTGTGGGCTGGTCACAGATCAGAATGCAGTAGTCCGACAGGCCAGTGATTAGCAGAATGAGAGGCTCTATAGCAATCTAACAGACGACGGACTTGTATTGAGACACGTTACGACACTTGACTACTCATTGCTAAATACACGCTACCGGATTGCCTGGATGACTTCAGTGACCTCATTGACCTCGGAGGACCCAGGAGCTGGGAGGCCTCGTGGAGGATCACTACCCTGTTTAACTCACGGGGAAGGCATGGACATAGAGAAACACAATCAATAGAAAACAAAGCTTTCCCCAGCCCCTTCGACTGTACATCCCAGCAATGGTTTTAGTTTTGTGCAGTAGAACGCTCACCCCTCCAGGGTTTGTGCTATATATGCTGTCTGTCACCGTTAGTTCTTTTGGGAGTTTGACAGACATGACCCTTGATCACATTTACAGATCCCTGTACTTCCTCCTCACTTGTCCCCTGCCTTCTGCTAAAGTTCCGGACAGCTAGGCTCTCTCTGGGGCTGGAGACGCAGTCTCAGAAAGAGCTCCTCAACAACATTCCCCAGTGGTTGGTGAGGAGCTACACTACAATAACTGCCACTCAGAAACACAACCACTCAGTAGGCCTCAACCTGGAGCAGTACAGTTAGCTGGAGAAGAAAAACAAAGAACGCACTCTCCCAACGTTTACTCACAGACAGGGCAAGACTGGTAGGACCATTACAAGAACAGCACATCTATCTATAAAACGCAACCAGTTTCAAAGAGCAGAATCTGTTGTAGCAGCTCAAGAAACATGGATCATATAAAACAACCTCAAGCAGAGCGAACAATGGACGGGACAGCAGAGGCAGAATGTGTTATGACGTTACATATGAAATTATGAGTGGGCCTTCTTCATTGCTTTCATAGGAGTAATACTTTCAGTGTGTGGATGTATGTAGACATGGAGTTCTCCATTTCGAACTAGCAGTGGCCAGTCAATGCCATGCAGACCACAGCTTTCACAGGAACCTATGAAAACAATACACAATAGCCTTTGTACATTTAGATGTCTGAGTGCTACCTAACCCTCAGACAgatacacagtacatacacacaacatgtGTCTCCAAGCCATTTATCCAAGGTCTTACTACAACTGGCTGTGGAATCTGCAGTTAACAACAACATGGAATGAATACTGATGGTGGTGTACATTGATttaaatacacacaaaaaaaggaCACACTTATCCATGTTACAACGACGGCAACAGCAACTCTGACAGGAAGTTGGAGAGGAAAGACGTAGCGGCACTGTAGTGGTTTGTATGAGATGCTAAGTGGACAATGTGCATGTAGACATTGATTAAAGTGCGTGCAAACTCTTAGAGAAAGAGATAGACACCGGTGGATGGGGGCTGGCAGTTGTCTGCAATTCACTACAAAGGGCCAAGCTCCAAACTGGAATACAGCAGTCATCATACCAGGGGTTCAACAGACAGAACATTACCCattcaaatgatcaaatcaaatacagAATGAATGTGAGCTGTGACTTTTCAAAAGACTTGGATGGGACTATCAGTCATGATACACAATGTGACAGAGGTTCTATTTCACAGAGGCCACTGAAAGAGCACGgacaccaacacatctccagtCTGTCTCCACCCCGATCTTCTGCTCCTCTATCTTGCATTGTATTTGGTTCTGGATTGGTTTGTTTTGTCTCTCTGCTTTGCTGTCATGGTAAAATACTCCCGGTCCTACATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2489837 True 3006 lncRNA 0.43 2 34658175 34661244

Neighbor

gene id symbol gene type direction distance location
LOC110510152 LOC106563684 coding downstream 28873 34619958 ~ 34629302 (-)
hif1al2 LOC106563688 coding downstream 93034 34546781 ~ 34565141 (-)
trnas-gcu-266 NA coding downstream 111790 34546304 ~ 34546385 (-)
LOC110510139 LOC106563695 coding downstream 273591 34362509 ~ 34384584 (-)
LOC110510135 LOC106563696 coding downstream 315715 34338911 ~ 34342460 (-)
leap-2b leap-2b coding upstream 23175 34684417 ~ 34685804 (-)
LOC110510156 LOC106563681 coding upstream 54695 34715939 ~ 34727232 (-)
LOC110510161 LOC106563678 coding upstream 148627 34809871 ~ 34814939 (-)
LOC110510165 atg4a coding upstream 189952 34851196 ~ 34862503 (-)
LOC110510171 NA coding upstream 303885 34965129 ~ 34979665 (-)
G2178312 NA non-coding downstream 3555 34654078 ~ 34654620 (-)
G2178283 NA non-coding downstream 43920 34612840 ~ 34614255 (-)
G2178276 NA non-coding downstream 68547 34589170 ~ 34589628 (-)
G2178274 NA non-coding downstream 70240 34587612 ~ 34587935 (-)
G2178088 NA non-coding downstream 76734 34580846 ~ 34581441 (-)
G2178326 NA non-coding upstream 17340 34678584 ~ 34678907 (-)
G2178362 NA non-coding upstream 84913 34746157 ~ 34746483 (-)
G2178374 NA non-coding upstream 99519 34760763 ~ 34762133 (-)
G2178377 NA non-coding upstream 102002 34763246 ~ 34763490 (-)
G2177991 cfb other downstream 510856 34092047 ~ 34216247 (-)
G2177695 NA other downstream 1145849 33511296 ~ 33512326 (-)
G2176363 NA other downstream 2013603 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 2224534 32395346 ~ 32433641 (-)
G2178372 NA other upstream 141947 34792330 ~ 34809382 (-)
G2179862 NA other upstream 1300740 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 1843229 36499597 ~ 36596534 (-)
G2180120 NA other upstream 1845296 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 2315910 36975909 ~ 36979761 (-)

Expression


Co-expression Network