G2177562


Basic Information

Item Value
gene id G2177562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34792337 ~ 34808689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2489008
CCAATATCAGCCGAtagtaataataatttattacatttctatagCGCTTTTCATAATCCCCAAGCGCTTCAAAAGAAGAAAACAAACAACCAATACATCAttatgagtagcctagctatagttagcttggtcaaccaatacatcatcatgagtagcctagctgtAATTAGCTTGGTCAACCAAAacatcatcatgagtagcctagctatagttagcttGGTCAACCAAAACATCatcatgagtagcctagctatagttagcttggggtctgaatactttctaaatgcactgtatatgattataatataatacacaaggTCCAGTATAAAGGTGTTTATTTCATGAGTCATGATATTGTAGTTTGAATATTATTTGTGGTTTCAGTTGCATATCTTCCACCTGTAAATGAGTCAGACAAAAACCACAATGTTGTTTTCAAGGTGAAGAGGCCAAGGCATTCTTTCAACTAGTCTGATCTGTAACATAATGCACTTAAATATGTCTATTGAAAAGTATTTAGTGTTCTGTTCTGGTTCTATATGAAGAAGATGCCACGTCAAGTGTATATCAGGTTGGTTGATACTTTTGGACACATGGTACTGTAGTCGTAACTGTGTCATCAACACAACTTCTTGTTATCTGAGGGACGTCCCTTTTGTAACGgatgtcgtctggagatagagaggaggaccaaaatgcagcgtgatgaTTATCCATTTTTAATGGGATACTTAAACAACGAACAAAAACAATGAaccgacaaaaaaaaaaaagaccgaAGACGTAACGTGAATACCaacacaggaacaatcacccacaccccacaatacaaaacaggctacctaaatatggttcccaatcagagacaacgactaacacctgcctctgattgagaaccatatcaggccaaacacatagaaacagacaaactagacatacaacatagaatgcccactcatatcacaccctgaccacacaaaacatagaaacaaacagcgCAAACTATGGTCAGAGTGTGTCACCTTTGTTTTACTTGTCTACAGTGTTGTGGTTAAGTATTGATACCCTAATTGGCAGTGTGTAACATCAGTTGTCGTTTTTGGTGAACATAATTTGCTGAAGATTTGCTGGTTGACTAACGActaccatgtctgtgtgtgtgtgccttgctGTTAATTTATTTTCTGACTCTTTTAATGCCTGAAGAGATAGTCCTGaattatatatatactgtatatatttttattttacccttattttaccaggtaagttgactgagaacacattctcatttacagcaacgacctggggaatagttacaggagagaggagggggatgaatgagccaattgtaaactggggatgattaggtggccatgatggtatgagggccagattgggaatttagtttGGGAAATAGATAGTCCTGAAGAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2489008 True 1435 lncRNA 0.38 2 34792337 34808689

Neighbor

gene id symbol gene type direction distance location
LOC110510158 LOC106563717 coding upstream 9479 34763682 ~ 34782858 (+)
LOC110510157 LOC106563680 coding upstream 31179 34748870 ~ 34761158 (+)
LOC110510155 LOC106563682 coding upstream 76791 34703325 ~ 34715546 (+)
LOC110510153 LOC106563683 coding upstream 131088 34638233 ~ 34661249 (+)
LOC118945290 NA coding upstream 154329 34635244 ~ 34638008 (+)
si:ch73-362m14.2 LOC106563676 coding downstream 7017 34815706 ~ 34822942 (+)
LOC110510163 LOC106563675 coding downstream 17555 34826244 ~ 34844491 (+)
LOC110510164 LOC106563716 coding downstream 37762 34846451 ~ 34850826 (+)
LOC110510166 LOC106563673 coding downstream 55417 34864106 ~ 34869495 (+)
cx04a cx04a coding downstream 61269 34869958 ~ 34870902 (+)
G2177621 NA non-coding upstream 13361 34778727 ~ 34778976 (+)
G2177618 NA non-coding upstream 15715 34776392 ~ 34776622 (+)
G2177616 NA non-coding upstream 19218 34772830 ~ 34773119 (+)
G2177614 NA non-coding upstream 22322 34769801 ~ 34770015 (+)
G2177629 LOC106563678 non-coding downstream 1204 34809893 ~ 34813858 (+)
G2177636 NA non-coding downstream 42559 34851248 ~ 34852129 (+)
G2177565 NA non-coding downstream 73698 34882387 ~ 34883032 (+)
LOC110510169 NA non-coding downstream 78994 34887683 ~ 34895727 (+)
G2178457 NA non-coding downstream 87510 34896199 ~ 34896628 (+)
G2177424 NA other upstream 331568 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 560154 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 656938 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1556802 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2666259 32115629 ~ 32150579 (+)
ndufa2 ndua2 other downstream 697159 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1042965 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1103801 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 1869882 36678571 ~ 36680297 (+)
G2180378 NA other downstream 2173657 36982346 ~ 36982614 (+)

Expression


Co-expression Network