Gene
RNA
| Item | Value |
|---|---|
| gene id | G2178444 |
| gene name | LOC106602948 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 34874436 ~ 34874930 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: high mobility group protein B3-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2489994 | True | 344 | lncRNA | 0.48 | 2 | 34874436 | 34874930 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110510165 | atg4a | coding | downstream | 11933 | 34851196 ~ 34862503 (-) |
| LOC110510161 | LOC106563678 | coding | downstream | 59497 | 34809871 ~ 34814939 (-) |
| LOC110510156 | LOC106563681 | coding | downstream | 147204 | 34715939 ~ 34727232 (-) |
| leap-2b | leap-2b | coding | downstream | 188665 | 34684417 ~ 34685804 (-) |
| LOC110510152 | LOC106563684 | coding | downstream | 245134 | 34619958 ~ 34629302 (-) |
| LOC110510171 | NA | coding | upstream | 90199 | 34965129 ~ 34979665 (-) |
| LOC110510172 | dach2 | coding | upstream | 128986 | 35003916 ~ 35289538 (-) |
| LOC118945291 | NA | coding | upstream | 474435 | 35349365 ~ 35368562 (-) |
| LOC110510176 | LOC106563749 | coding | upstream | 524406 | 35399336 ~ 35421812 (-) |
| LOC110510173 | LOC106563748 | coding | upstream | 547036 | 35421966 ~ 35454525 (-) |
| G2178440 | NA | non-coding | downstream | 3158 | 34871049 ~ 34871278 (-) |
| G2178421 | LOC106563675 | non-coding | downstream | 34877 | 34838735 ~ 34839559 (-) |
| G2178372 | NA | non-coding | downstream | 65054 | 34792330 ~ 34809382 (-) |
| G2178390 | NA | non-coding | downstream | 91733 | 34782470 ~ 34782703 (-) |
| G2178389 | NA | non-coding | downstream | 92185 | 34781859 ~ 34782251 (-) |
| G2178458 | NA | non-coding | upstream | 21223 | 34896153 ~ 34896467 (-) |
| G2178462 | NA | non-coding | upstream | 24674 | 34899604 ~ 34899849 (-) |
| G2178463 | NA | non-coding | upstream | 25346 | 34900276 ~ 34900493 (-) |
| G2178667 | NA | non-coding | upstream | 50712 | 34925642 ~ 34929661 (-) |
| G2178698 | NA | non-coding | upstream | 100944 | 34975874 ~ 35016990 (-) |
| LOC110510135 | LOC106563696 | other | downstream | 532623 | 34338911 ~ 34342460 (-) |
| G2177991 | cfb | other | downstream | 727117 | 34092047 ~ 34216247 (-) |
| G2177695 | NA | other | downstream | 1362110 | 33511296 ~ 33512326 (-) |
| G2176363 | NA | other | downstream | 2229864 | 32643402 ~ 32644572 (-) |
| G2179862 | NA | other | upstream | 1087054 | 35961984 ~ 35962832 (-) |
| LOC110510209 | LOC106563761 | other | upstream | 1629543 | 36499597 ~ 36596534 (-) |
| G2180120 | NA | other | upstream | 1631610 | 36506540 ~ 36507120 (-) |
| LOC110509384 | NA | other | upstream | 2102224 | 36975909 ~ 36979761 (-) |
| G2180587 | NA | other | upstream | 2107027 | 36981957 ~ 36982709 (-) |
